View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12540_low_10 (Length: 327)
Name: NF12540_low_10
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12540_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 17701803 - 17701686
Alignment:
| Q |
157 |
tagaataaaacaaggaaatgagaataagggagtgatgaaaataaaccaacggtgacaaagtttaagtttgatgaaagaaagagaaagtaagataaaccct |
256 |
Q |
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| T |
17701803 |
tagaataaaacaaggaaatgagaataagggagtgatgaaaataaaccaacggtgacaaagttgaagtttgatgaaagaaagataaattaagataaaccct |
17701704 |
T |
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| Q |
257 |
agctattttttcggaaaa |
274 |
Q |
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| T |
17701703 |
agctatttcttcggaaaa |
17701686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 172 - 314
Target Start/End: Original strand, 17662294 - 17662433
Alignment:
| Q |
172 |
aaatgagaataagggagtgatgaaaataaaccaacggtgacaaagtttaagtttgatgaaagaaagagaaagtaagataaaccctagctattttttcgga |
271 |
Q |
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| T |
17662294 |
aaatgagaataagggagtgatgaaaataaactaaaggtaacaaagttgaagtttgatgaaagaaagagaaagtaagataaaccctagctatttcttcgga |
17662393 |
T |
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| Q |
272 |
aaagccctaactattattaccttataaacctcgcgcgttctct |
314 |
Q |
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| T |
17662394 |
aaagtcctaac---tattactttataaacctcgcgcgttctct |
17662433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 17661762 - 17661803
Alignment:
| Q |
71 |
aaaaaattgcaatgaacaaatatttgtttactaaaaatatat |
112 |
Q |
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| T |
17661762 |
aaaaaattacaatgaacaaatattagtttactaaaaatatat |
17661803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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