View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12540_low_12 (Length: 292)
Name: NF12540_low_12
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12540_low_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 36 - 292
Target Start/End: Complemental strand, 4866089 - 4865833
Alignment:
| Q |
36 |
taccctttctatcactactgttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaacttattgttcaaaacgtccaaa |
135 |
Q |
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| T |
4866089 |
taccctttctatcactactcttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaacttattgttcaaaacgtccaaa |
4865990 |
T |
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| Q |
136 |
aatgagcctatgaagggacgcacgatcgtgcaggtaaggcgcagggtccgtgcatgtcactcattgttcctgcgcacaaccacaccaatcagggacgcac |
235 |
Q |
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| T |
4865989 |
aatgagcctatgaagggacgcacgatcgtgcgggtaaggcgcagggtccgtgcatgtcaatcgttgttcctgcgcacaaccacaccaatcagggacgcac |
4865890 |
T |
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| Q |
236 |
aaccagacaaaagatgcgcacgaccgtgctgagtgaaaatggcatggaaacctgatt |
292 |
Q |
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| T |
4865889 |
gaccagacaaaagatgcgcacgaccgtgctgagtgaaaatggcatggaaacttgatt |
4865833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 35937019 - 35936952
Alignment:
| Q |
54 |
tgttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaacttattgt |
121 |
Q |
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| T |
35937019 |
tgttggtgacatcaactccgattttcaagacgtgcttgtatcacccggacttgcttctaatttattgt |
35936952 |
T |
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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 17039361 - 17039435
Alignment:
| Q |
46 |
atcactactgttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaacttattg |
120 |
Q |
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| T |
17039361 |
atcactaatgttggtaacataaactctgattttcgagatgtgcttgtatcacctggacttgcttccaacctattg |
17039435 |
T |
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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 17605755 - 17605682
Alignment:
| Q |
40 |
ctttctatcactactgttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaa |
113 |
Q |
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| T |
17605755 |
ctttctatcactgatgttggtgacataaactctgattttcgggatgtgcttgtatcacctggacttgcttccaa |
17605682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 26626174 - 26626107
Alignment:
| Q |
54 |
tgttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaacttattgt |
121 |
Q |
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| T |
26626174 |
tgttggtgacatcaactctgattttcaagacgtgcttgtatcacccggacttgcttctaatttattgt |
26626107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 49117946 - 49118013
Alignment:
| Q |
54 |
tgttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaacttattgt |
121 |
Q |
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| T |
49117946 |
tgttggtgacatcaactctgattttcaagacgtgcttgtatcacccggacttgcttctaatttattgt |
49118013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 26635585 - 26635518
Alignment:
| Q |
54 |
tgttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaacttattgt |
121 |
Q |
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| T |
26635585 |
tgttggtgacatcaactctgattttcaagacgtgtttgtatcacccggacttgcttctaatttattgt |
26635518 |
T |
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