View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12540_low_13 (Length: 283)
Name: NF12540_low_13
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12540_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 170621 - 170355
Alignment:
| Q |
1 |
tgtggattcttgactttggttgttcttaccacatgacgctgcaatggaagtggttcactacattcaagtgaggtatttcaaaattgaaaaagaacttgat |
100 |
Q |
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| T |
170621 |
tgtggattcttgactttggttgttcttaccacatgacgccgcactggaagtggttcactacattcaagtgaggtatttcaaaattgaaaaagaacttgat |
170522 |
T |
|
| Q |
101 |
ttccgtaagtagtctacacgaaaacgactacctcaaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
170521 |
ttccgtaagtagtctacacgaaaacgactatctcaaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaa |
170422 |
T |
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| Q |
201 |
gttgatatgagcaattcaaaggttgtgaatacctcattgacaaatcacttaaaactctcatttgatt |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
170421 |
gttgatatgagcaattcaaaggttgtgaatacctcattgacaaatcacttaaaactctcatttgatt |
170355 |
T |
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