View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12540_low_15 (Length: 270)
Name: NF12540_low_15
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12540_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 19159073 - 19159305
Alignment:
| Q |
15 |
acctgtgtaccttcctttatttcatgtgatcagcctcaatggtatccacagggtgcacattctctttcccgtaggaacgataattggaacgcgtatgatt |
114 |
Q |
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| T |
19159073 |
acctgtgtaccttcctttatttcacgtgatcaacctcaatggtatccacatggtgcatattctctttcccgtaggaacgataattggaacgcgtatgatt |
19159172 |
T |
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| Q |
115 |
atgcacctgataaccaccatcgcgtaggaccatggtatctctcgatcagactgcccttgcatagggaaattcatcgaaactgtgctgatcaaagaagttg |
214 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19159173 |
ttgcacctgataaccaccatcgcgcaagaccatggtatctctcgatcgtcctgcccttgcatagggaaattcatcgaaattgtgctgatcaaagaagtta |
19159272 |
T |
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| Q |
215 |
ttcttatcggaataatattgctgccaatctgga |
247 |
Q |
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| T |
19159273 |
tccttatcggaataatactgctgccaatctgga |
19159305 |
T |
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