View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12540_low_18 (Length: 253)

Name: NF12540_low_18
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12540_low_18
NF12540_low_18
[»] chr3 (5 HSPs)
chr3 (3-239)||(36280768-36281006)
chr3 (47-185)||(6820768-6820907)
chr3 (57-180)||(7129924-7130048)
chr3 (138-173)||(48352158-48352193)
chr3 (125-174)||(26955807-26955856)
[»] chr8 (2 HSPs)
chr8 (58-239)||(33178045-33178224)
chr8 (118-175)||(15038747-15038804)
[»] chr1 (3 HSPs)
chr1 (123-239)||(16305297-16305411)
chr1 (138-173)||(48710362-48710397)
chr1 (138-174)||(13216975-13217011)
[»] chr5 (2 HSPs)
chr5 (138-173)||(27515880-27515915)
chr5 (138-174)||(42918027-42918063)
[»] chr6 (1 HSPs)
chr6 (118-183)||(2845423-2845488)
[»] chr4 (1 HSPs)
chr4 (111-180)||(1072686-1072755)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 36281006 - 36280768
Alignment:
Q  3 tactttgtttttgttagattcctgattggatgatatgtccctgagatac--ttatagaagattatacgagttagctgatataaattgacaaatgtagaga 100  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36281006 tactttgtttttgttagatccctgattggatgatatgcccctgagatacacttatagaagattatacgagttagctgatataaattgacaaatgtagaga 36280907  T
Q  101 atgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactgtgttggg 200  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  36280906 atgtgttcattatggggtggggagtgaacggtgaggagtggaagtggcgtaggaggttatttgcttgggaggaagagttggtgagagagagtgtgttggg 36280807  T
Q  201 cggttaattccaatggttttacaggttggatcagttgat 239  Q
    ||| ||| |||||||||||||||||||||||||||||||    
T  36280806 cggctaactccaatggttttacaggttggatcagttgat 36280768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 185
Target Start/End: Original strand, 6820768 - 6820907
Alignment:
Q  47 gatacttatagaagattatacgagttagctgata-taaattgacaaatgtagagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagt 145  Q
    |||| ||||||||||||||| ||||||||||| | ||||||| ||| |||||||||| |||||| ||   | ||||| |||||||||||| |||||||||    
T  6820768 gatagttatagaagattatatgagttagctgacaataaattggcaactgtagagaatatgttcactacatgatggggagtgaacggtgaggagtggaagt 6820867  T
Q  146 ggcgtaggaggttatttgcttgggaggaaaagttggtgag 185  Q
     ||||| |||||||||||||||| ||||| ||||||||||    
T  6820868 agcgtatgaggttatttgcttggaaggaagagttggtgag 6820907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 7130048 - 7129924
Alignment:
Q  57 gaagattatacgagttagctgatataaa-ttgacaaatgtagagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggag 155  Q
    |||||||||| |||||||| |||| ||| ||| ||| ||||||| || |||| ||||| |||||||| | ||| ||||||  ||| |||||| |||||||    
T  7130048 gaagattatatgagttagcggataaaaaattggcaattgtagagcatatgtttattatagggtggggagagaatggtgaggcgtgtaagtggtgtaggag 7129949  T
Q  156 gttatttgcttgggaggaaaagttg 180  Q
    ||| ||| ||||||||||| |||||    
T  7129948 gttgttttcttgggaggaagagttg 7129924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 173
Target Start/End: Original strand, 48352158 - 48352193
Alignment:
Q  138 gtggaagtggcgtaggaggttatttgcttgggagga 173  Q
    |||||||||||| |||||||||||||||||||||||    
T  48352158 gtggaagtggcggaggaggttatttgcttgggagga 48352193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 26955856 - 26955807
Alignment:
Q  125 tgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaa 174  Q
    |||| ||||||| ||| |||||||||| |||||| |||||||||||||||    
T  26955856 tgaatggtgagacgtgaaagtggcgtaagaggttgtttgcttgggaggaa 26955807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 239
Target Start/End: Complemental strand, 33178224 - 33178045
Alignment:
Q  58 aagattatacgagttagctgatataaattgacaaatgtagagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggt 157  Q
    |||||| ||||||||| |||  |||| ||||||| ||| | | || ||||   ||||||||||||| |||| || |||  |||||||||||||  |||||    
T  33178224 aagattttacgagttaactgcaataagttgacaactgtggtggatatgttttctatggggtgggggctgaatggagaggcgtggaagtggcgtcagaggt 33178125  T
Q  158 tatttgcttgggaggaaaagttggtgagagagactgtgttgggcggttaattccaatggttttacaggttggatcagttgat 239  Q
    | || |||||||||||| |||||||||| |||  ||||| |||||  ||| |||| | ||||||||||||||||||| ||||    
T  33178124 tgttcgcttgggaggaagagttggtgagggag--tgtgtagggcgtctaactccagttgttttacaggttggatcaggtgat 33178045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 15038804 - 15038747
Alignment:
Q  118 tggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaa 175  Q
    ||||| ||||||||||||  |||||||||| |||||| ||| ||||||||||||||||    
T  15038804 tggggagtgaacggtgagccgtggaagtggtgtaggacgttgtttgcttgggaggaaa 15038747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 239
Target Start/End: Complemental strand, 16305411 - 16305297
Alignment:
Q  123 ggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactgtgttgggcggttaattccaatggttttac 222  Q
    |||||| ||||||  |||||||| | ||||||||||||| |||||||||||| ||||| |||| |||  |||||| ||| | ||| |  | ||||||| |    
T  16305411 ggtgaatggtgaggtgtggaagttgtgtaggaggttattcgcttgggaggaagagttgctgagggag--tgtgttaggcagctaacttgagtggttttgc 16305314  T
Q  223 aggttggatcagttgat 239  Q
    |||||||| ||||||||    
T  16305313 aggttggaacagttgat 16305297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 173
Target Start/End: Complemental strand, 48710397 - 48710362
Alignment:
Q  138 gtggaagtggcgtaggaggttatttgcttgggagga 173  Q
    ||||||||||||||||||||||||||| ||||||||    
T  48710397 gtggaagtggcgtaggaggttatttgcgtgggagga 48710362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 13217011 - 13216975
Alignment:
Q  138 gtggaagtggcgtaggaggttatttgcttgggaggaa 174  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  13217011 gtggaagtggagtaggaggttattagcttgggaggaa 13216975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 173
Target Start/End: Complemental strand, 27515915 - 27515880
Alignment:
Q  138 gtggaagtggcgtaggaggttatttgcttgggagga 173  Q
    ||||||||||||||||||||||||||| ||||||||    
T  27515915 gtggaagtggcgtaggaggttatttgcgtgggagga 27515880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 42918027 - 42918063
Alignment:
Q  138 gtggaagtggcgtaggaggttatttgcttgggaggaa 174  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  42918027 gtggaaatggcggaggaggttatttgcttgggaggaa 42918063  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 2845488 - 2845423
Alignment:
Q  118 tggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtg 183  Q
    ||||| ||||||||||||| | |||||||||| ||||| || |||||||| || || |||||||||    
T  2845488 tggggagtgaacggtgagacgaggaagtggcgaaggagattgtttgcttgagatgagaagttggtg 2845423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 1072686 - 1072755
Alignment:
Q  111 tatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttg 180  Q
    |||||||||||| ||||| ||||||  ||| ||||| |||||||||||| | | |||||||||| |||||    
T  1072686 tatggggtggggtgtgaatggtgaggcgtgcaagtgtcgtaggaggttactcgtttgggaggaagagttg 1072755  T

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