View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12540_low_19 (Length: 247)
Name: NF12540_low_19
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12540_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 28840770 - 28840533
Alignment:
| Q |
1 |
catgtggagcaaccattcatcctatgccaagcttagctccaatattatatccttaaccaaatttaaacaacccatctcttggtaattttcaacaacatct |
100 |
Q |
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| T |
28840770 |
catgtggagcaaccattcatcctatgccaagcttagctccaatattatatccttaaccaaatttaaacaacccatctcttggtaattttcaacaacatct |
28840671 |
T |
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| Q |
101 |
gcatataagagtcaaaacatataagtttaccaattattcaataatcaaaccacacttcattggcgaacacttgttttatggactatttttaattaaaaca |
200 |
Q |
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| T |
28840670 |
gcatataagagtcaaaacatataagtttaccaattattcaataatcaaaccacacttcattggcgaacacttgttttatggactatttttaattaaaaca |
28840571 |
T |
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| Q |
201 |
aaaattataattaaaacactattatggactatttcttctct |
241 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |
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| T |
28840570 |
aaaattata---aaaacactattatggactatttcttctct |
28840533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 22728912 - 22728757
Alignment:
| Q |
1 |
catgtggagcaaccattcatcctatgccaagcttagctccaatattatatccttaaccaaatttaaacaacccatctcttggtaattttcaacaacatct |
100 |
Q |
| |
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|||| ||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
22728912 |
catgaggagcaaccattcattctacgccacgcttagctccaatattatatccttaacctaatttaaataacccatctcttggtaattttcaacaacatct |
22728813 |
T |
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| Q |
101 |
gcatataagagtcaaaacatataagtttaccaattattcaataatcaaaccacacttc |
158 |
Q |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22728812 |
gc--ataagaatcaaaacatataagtttaccaattattcaataatcaaaccacccttc |
22728757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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