View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12540_low_3 (Length: 481)
Name: NF12540_low_3
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12540_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 226 - 470
Target Start/End: Complemental strand, 32750222 - 32749978
Alignment:
| Q |
226 |
caaacaatcatgattaatagttgaaaattgattaattactgattaataggtcaaacgtgaagaacatttggggtatatgatggtaagtatgcaaatgcat |
325 |
Q |
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| T |
32750222 |
caaacaatcatgattaatagttgaaaattgattaattactgattaataggtcaaacgtgaagaacatttggggtatatgatggtaagtatgcaaatgcat |
32750123 |
T |
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| Q |
326 |
gnnnnnnnatcttcttaatttgacagcatagtattagtatagaatctttaggtttaccgtaacaatgagggtcaatgataaccacaacaacaatgctcgc |
425 |
Q |
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| T |
32750122 |
gtttttttatcttcttaatttgacagcatagtattagtatagaatctttaggtttaccgtaacaatgagggtcaatgataaccacaacaacaatgctcgc |
32750023 |
T |
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| Q |
426 |
ggaaaagatccggttttcggtgcaatctttattgcaaacagtgaa |
470 |
Q |
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| T |
32750022 |
ggaaaagatccggttttcggtgcaatctttattgcaaacagtgaa |
32749978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 32750367 - 32750299
Alignment:
| Q |
81 |
cgctcacaaacaacaagcaaacgtcataatccaaatcgtgttttaggtcaaatttgtttcaactaggtc |
149 |
Q |
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| T |
32750367 |
cgctcacaaacaacaaacaaacgtcataatccaaatcgtgttttaggtcaaatttgtttcaactaggtc |
32750299 |
T |
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