View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12540_low_6 (Length: 355)
Name: NF12540_low_6
Description: NF12540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12540_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 29838838 - 29839162
Alignment:
| Q |
18 |
tgtacatatctggattgtcccatttttgtattgtttaatctaaataaccttcttcattcctttgatgtttattactctggctttgattttaggagaaact |
117 |
Q |
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| T |
29838838 |
tgtacatatctggattgtcccatttttgtattgtttaatctaaataaccttcttcattcctttgatgtttattactctggctttgattttaggagaaact |
29838937 |
T |
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| Q |
118 |
taccagttgacctagcggaaggagttctccgagcactctctctacaagctttaggacaggtattgatgtttcttttgcatagactcgtcaagtgtcattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29838938 |
taccagttgacctagcggaaggagttctccgagcactctctctacaagctttaggacaggtattgatgtttcttttgcatagactcgtcaagtgtcattt |
29839037 |
T |
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| Q |
218 |
gtatcattgttcctcagtggctaaaaactaatctgcttccctaacatggaaatttatttagttatcttatcgcaaagttatgtcgattatgcaaaccgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29839038 |
gtatcattgttcctcagtggctaaaaactaatctgcttccctaacatggaaatttatttagttatcttatcgcaaagttatgtcgattatgcaaaccgtt |
29839137 |
T |
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| Q |
318 |
gatttagcatcgctagggaataatg |
342 |
Q |
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||||||||||||||||||||||||| |
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| T |
29839138 |
gatttagcatcgctagggaataatg |
29839162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 34627358 - 34627277
Alignment:
| Q |
101 |
tgattttaggagaaacttaccagttgacctagcggaaggagttctccgagcactctctctacaagctttaggacaggtattg |
182 |
Q |
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||||||||||||||| |||||||| ||||| || ||||||||||| || || |||| ||||||||| || |||||||||||| |
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| T |
34627358 |
tgattttaggagaaatttaccagtagaccttgcagaaggagttcttcgtgcgctctgtctacaagcattgggacaggtattg |
34627277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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