View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12541_high_1 (Length: 473)
Name: NF12541_high_1
Description: NF12541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12541_high_1 |
 | |
|
| [»] scaffold1439 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 450
Target Start/End: Original strand, 34989611 - 34990041
Alignment:
| Q |
20 |
attaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatt |
119 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34989611 |
attaccacaagaaataaggatgttgccatgtattgtaagaaatcttcatttattgaagtgcatgaactacaaccattaactgaagaacaatcaattgatt |
34989710 |
T |
|
| Q |
120 |
tgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttacc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34989711 |
tgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctaggaagtgcaagggcttacc |
34989810 |
T |
|
| Q |
220 |
actagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
34989811 |
actagcaattgtgactattggtggtcttttatctacaaaggggagaaatgcatttgaatggcagagatttagtgaaaatatgactgtagagctaaggaat |
34989910 |
T |
|
| Q |
320 |
gattcccatttgaccagaataaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccag |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34989911 |
gattcccatttgaccagaataaaaaagattttaggtcttagctatgatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccag |
34990010 |
T |
|
| Q |
420 |
aagattatgaagttaaatcaaagagagtgat |
450 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
34990011 |
aagattatgaagttaaatcaaagagaatgat |
34990041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 459
Target Start/End: Complemental strand, 2305557 - 2305119
Alignment:
| Q |
20 |
attaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatt |
119 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||| ||| | |||||| |
|
|
| T |
2305557 |
attaccacaagaaatatggatgttgccatatattgtaagaaatcttcttttattcaagtgcatgaactacaacttttaactgaggaaaaataatttgatt |
2305458 |
T |
|
| Q |
120 |
tgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttacc |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
2305457 |
tgtttaataagaaggcatttcaatttgactttgaaggatgttgtccaaaagagctcattgatatatcttttgaaatcgctaggaagtgcaagggcttacc |
2305358 |
T |
|
| Q |
220 |
actagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaat |
319 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| |
|
|
| T |
2305357 |
cctagcaattgtaactattggtggtcttttatctacaaaggagaaaaatgcatttgaatggcagagatttagtgaaaatatgactttagagttaaagaat |
2305258 |
T |
|
| Q |
320 |
gattcccatttgaccagaataaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccag |
419 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
2305257 |
gattcccatttgaccgggataaaaaagattttaggttttagctatggtgatttgcctttttatcttaaatcgtgtttg-tatattttggaatgtatccag |
2305159 |
T |
|
| Q |
420 |
aagattatgaagttaaatcaaagagagtgattctacagtg |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2305158 |
aagattatgaagttaaatcaaagagagtgattcgacagtg |
2305119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 225 - 459
Target Start/End: Original strand, 34975970 - 34976204
Alignment:
| Q |
225 |
caattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattc |
324 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
34975970 |
caattgtaactattgggggtcttttatctacaaaggagaaaaatgtatttgaatgacagagatttagtgaaaatatgacttttgagctaaagaatgattc |
34976069 |
T |
|
| Q |
325 |
ccatttgaccagaataaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagat |
424 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||||||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||||| ||| | |
|
|
| T |
34976070 |
tcatttgaccgggataaaaaagattttaggttttagctatgatgatctgccttgttatcttaaatcgtgtttgttatattttggaatgtatccaaaaggt |
34976169 |
T |
|
| Q |
425 |
tatgaagttaaatcaaagagagtgattctacagtg |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
34976170 |
tatgaagttaaatcaaagagagtgattctacagtg |
34976204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 225 - 459
Target Start/End: Original strand, 34983081 - 34983315
Alignment:
| Q |
225 |
caattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattc |
324 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
34983081 |
caattgtaactattgggggtcttttatctacaaaggagaaaaatgtatttgaatgacagagatttagtgaaaatatgacttttgagctaaagaatgattc |
34983180 |
T |
|
| Q |
325 |
ccatttgaccagaataaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagat |
424 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||||||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||||| ||| | |
|
|
| T |
34983181 |
tcatttgaccgggataaaaaagattttaggttttagctatgatgatctgccttgttatcttaaatcgtgtttgttatattttggaatgtatccaaaaggt |
34983280 |
T |
|
| Q |
425 |
tatgaagttaaatcaaagagagtgattctacagtg |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
34983281 |
tatgaagttaaatcaaagagagtgattctacagtg |
34983315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 28 - 450
Target Start/End: Complemental strand, 22657130 - 22656708
Alignment:
| Q |
28 |
aagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaat |
127 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||| |||| ||||| ||| |
|
|
| T |
22657130 |
aagaaatatggatgttgcggtgtattgtaagaaatcttcttttattgaagtgcatgaactacatcctttaacagtagaacaatcttttgagttgtttaat |
22657031 |
T |
|
| Q |
128 |
aagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaa |
227 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| || ||||| || |||| |
|
|
| T |
22657030 |
aagaaggcctttcaatttgactttaatggatgttgtccaaaagagctcattgatatatcttccgaaattgctagaaaatgcaaaggtttaccgctggcaa |
22656931 |
T |
|
| Q |
228 |
ttgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattccca |
327 |
Q |
| |
|
||||| ||||||| || ||||||||||||||||||| |||||||||||||||||| |||| || ||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
22656930 |
ttgtggctattggcggccttttatctacaaaggagaaaaatgcatttgaatggcaaagatttaatgaaaatataactttagagttaaataatgattccca |
22656831 |
T |
|
| Q |
328 |
tttgaccagaataaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagattat |
427 |
Q |
| |
|
||| ||| | |||||||| || | ||| | ||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
22656830 |
tttaaccgggataaaaaaaatacttggtttcagctacgatgatttgcctttttatcttaagtcatgtttgttgtattttggaatatatccagaagattat |
22656731 |
T |
|
| Q |
428 |
gaagttaaatcaaagagagtgat |
450 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
22656730 |
gaagttgaatcaaagagagtgat |
22656708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 28 - 433
Target Start/End: Complemental strand, 22648248 - 22647843
Alignment:
| Q |
28 |
aagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaat |
127 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| || ||||||||| ||||| | ||||||||||| | |||||||| |||| |||||||| |
|
|
| T |
22648248 |
aagaaatatggatgttgccatatattgtaagaaatcttctttcattgaagtgtatgaattgcaacctttaacaaatgaacaatcttttgagttgttcaac |
22648149 |
T |
|
| Q |
128 |
aagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaa |
227 |
Q |
| |
|
|||||| ||||||| |||||| | ||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||||||| ||||| || |||| |
|
|
| T |
22648148 |
aagaagacatttcagtttgacaacaatggatgttgtccaaaagaactcattgatatatcttttgaaatttctagaaaatgcaagggtttaccgctggcaa |
22648049 |
T |
|
| Q |
228 |
ttgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattccca |
327 |
Q |
| |
|
|||| | ||||||||||| || |||||||| |||| ||||| |||||| ||||||| || | || ||||||||||||||||||||| ||| ||||| | |
|
|
| T |
22648048 |
ttgttgccattggtggtctattgtctacaaaagagaaaaatgtatttgagtggcagaaattttgtaaaaatatgactttagagctaaagaaagattctct |
22647949 |
T |
|
| Q |
328 |
tttgaccagaataaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagattat |
427 |
Q |
| |
|
|||| || | |||| || |||||||| | ||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
22647948 |
tttggccgggataagcaaaattttaggattcagctacaatgatttgcctttctatcttaaaccatgtttcttatattttggaatgtatcccgaagattat |
22647849 |
T |
|
| Q |
428 |
gaagtt |
433 |
Q |
| |
|
|||||| |
|
|
| T |
22647848 |
gaagtt |
22647843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 28 - 452
Target Start/End: Complemental strand, 22620978 - 22620536
Alignment:
| Q |
28 |
aagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaat |
127 |
Q |
| |
|
||||| || ||||||||| || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
22620978 |
aagaagtatggatgttgctatttattgtaaaaaatcttcttttattgaggtgcatgaactacaacctttaactgaggaacaatcttttgagttgttcaat |
22620879 |
T |
|
| Q |
128 |
aagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaa |
227 |
Q |
| |
|
||||||| ||||| ||||||||| || ||| ||||||||||||| || ||||||||| ||| |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
22620878 |
aagaaggtatttcgatttgactttgatggaagttgtccaaaagatctaattgatatatcttccgaaattgctagaaaatgcaagggtttaccactagcaa |
22620779 |
T |
|
| Q |
228 |
ttgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatga------------------ctttaga |
309 |
Q |
| |
|
|||| | ||||||||||||||||||||||| || |||||||||||| |||| ||||| || ||||||||||| ||||||| |
|
|
| T |
22620778 |
ttgtagccgttggtggtcttttatctacaaagttgaaaaatgcatttgattggcggagatttaatgaaaatatgacttttaatgaaaatatgactttaga |
22620679 |
T |
|
| Q |
310 |
gctaaggaatgattcccatttgaccagaataaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttgga |
409 |
Q |
| |
|
||||| ||| ||| || |||||| | || ||||| || |||||| | |||||| ||||||||||| || |||||||||||||||| || ||||||||| |
|
|
| T |
22620678 |
gctaaagaaggatcccaatttgatagggattaaaaaaatattaggtttcagctatgatgatttgcctcttcatcttaaatcatgtttattgtattttgga |
22620579 |
T |
|
| Q |
410 |
atgtatccagaagattatgaagttaaatcaaagagagtgattc |
452 |
Q |
| |
|
| ||||||||||||||| ||||| | ||||||||| |||||| |
|
|
| T |
22620578 |
ttatatccagaagattataaagttgattcaaagagattgattc |
22620536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 52 - 449
Target Start/End: Original strand, 22034943 - 22035340
Alignment:
| Q |
52 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
151 |
Q |
| |
|
|||||| |||||||| || ||||| |||| ||| || |||||||||||| ||||||||||| | | |||||||||||||||||||| ||||||||| |
|
|
| T |
22034943 |
ttgtaaaaaatcttctttcattgaggtgcttgagctgcaacctttaactcaagaacaatcattgaagttgttcaataagaaggcattcaaatttgactac |
22035042 |
T |
|
| Q |
152 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttat |
251 |
Q |
| |
|
| ||| | |||||| ||||||||||||| ||||||| |||||||| || |||||| ||||| || |||||||||||||| |||||||||| ||||||| |
|
|
| T |
22035043 |
ggagggtcttgtcccaaagagctcattggtatagctaatgaaattgttaaaaagtgaaagggtttgccactagcaattgttgctattggtggacttttat |
22035142 |
T |
|
| Q |
252 |
ctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattcccatttgaccagaataaaaaagatttt |
351 |
Q |
| |
|
|||||| |||| ||||| ||||| |||||||||| ||| |||||| | | ||||||||||| || ||| | ||| | | | |||||| | ||||| |
|
|
| T |
22035143 |
ctacaagagagaaaaatgtgtttgagtggcagagatttagagaaaatttaaatttagagctaaagacagatacacatctaattgggataaaagaaatttt |
22035242 |
T |
|
| Q |
352 |
aggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagattatgaagttaaatcaaagagagtga |
449 |
Q |
| |
|
| || | || ||| |||||||||||| ||||| || |||| ||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22035243 |
aagtttaagttatgatgatttgccttactatctcaagccatgcttgttgtattttggagtatatccagaagattttgaagttaaatcaaagagagtga |
22035340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 52 - 445
Target Start/End: Original strand, 22115511 - 22115904
Alignment:
| Q |
52 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
151 |
Q |
| |
|
|||||| |||||||| || ||||| |||| | | || |||||||||||| ||||||||||| | | |||||||||||||||||||| ||||||||| |
|
|
| T |
22115511 |
ttgtaaaaaatcttctttcattgaggtgctttagctgcaacctttaactcaagaacaatcattgaagttgttcaataagaaggcattcaaatttgactac |
22115610 |
T |
|
| Q |
152 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttat |
251 |
Q |
| |
|
| ||| | |||||| ||||||||||||| ||||||| |||||||| || ||| |||||||| ||||| ||||||||||| | || ||||| ||||||| |
|
|
| T |
22115611 |
ggagggtcttgtcccaaagagctcattggtatagctaatgaaattgttaaaaaatgcaagggtttaccgctagcaattgttgccatcggtggacttttat |
22115710 |
T |
|
| Q |
252 |
ctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattcccatttgaccagaataaaaaagatttt |
351 |
Q |
| |
|
|||||| |||| ||||| ||||| |||||||||| ||| |||||| | | ||| ||||||| || ||| | ||| | | | |||||| | ||||| |
|
|
| T |
22115711 |
ctacaagagagaaaaatgtgtttgagtggcagagatttagagaaaatttaaattttgagctaatgacagatacacatcttattgggataaaagaaatttt |
22115810 |
T |
|
| Q |
352 |
aggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagattatgaagttaaatcaaagaga |
445 |
Q |
| |
|
| || | || ||| |||||||||||| ||||| || ||||||||||| ||||||||| | || |||||||||| ||||||||||||||||||| |
|
|
| T |
22115811 |
atgtttaagttatgatgatttgccttactatctcaagtcatgtttgttgtattttggagtatacccagaagattttgaagttaaatcaaagaga |
22115904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 62 - 452
Target Start/End: Original strand, 22187424 - 22187814
Alignment:
| Q |
62 |
tcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgtt |
161 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||| || ||||||||| | || |||||||||||||||||||| || |||| | || || |||| |
|
|
| T |
22187424 |
tcttcttttattgaggtgcatgaactgcaacctttatctctagaacaatctttggagttgttcaataagaaggcattcaaaattgattgtgatgggtgtt |
22187523 |
T |
|
| Q |
162 |
gtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaagga |
261 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||||| || ||| |||| || ||||| ||||||||||| | || ||||| ||||||||||||| || |
|
|
| T |
22187524 |
gtccaaacgagctcattggtatagctgatgaaattgttaaaaaatgcagtggtttaccgctagcaattgttgccatcggtggccttttatctacaagaga |
22187623 |
T |
|
| Q |
262 |
gagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattcccatttgaccagaataaaaaagattttaggtcttagc |
361 |
Q |
| |
|
|| ||||| ||||| |||||||||| ||| ||| || ||| || |||||||| || || | ||| | | | ||| |||| |||||| || | || |
|
|
| T |
22187624 |
gaaaaatgtgtttgagtggcagagatttagagaacatctgaattcagagctaaagacaaatgcacatctaattgggatagaaaaaattttaagtttaagt |
22187723 |
T |
|
| Q |
362 |
tatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagattatgaagttaaatcaaagagagtgattc |
452 |
Q |
| |
|
||| |||||||||||| ||||| || |||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22187724 |
tatgatgatttgccttactatctcaagccatgcttgttgtattttggagtatatccagaagattatgaagttaaatcaaagagagtgattc |
22187814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 52 - 449
Target Start/End: Original strand, 21930847 - 21931244
Alignment:
| Q |
52 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
151 |
Q |
| |
|
|||||| |||||||| || |||||| ||| ||| | |||||||||||| | |||||||| | || |||||||||||||||||||| ||||||||| |
|
|
| T |
21930847 |
ttgtaaaaaatcttctttcattgaaatgcttgagttgcaacctttaactcatgaacaatctttggagttgttcaataagaaggcattcaaatttgactat |
21930946 |
T |
|
| Q |
152 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttat |
251 |
Q |
| |
|
|| || |||||||||| ||||||||||| || | || |||||||| || ||| ||||| || ||||| ||||||||||| | || ||||| ||||||| |
|
|
| T |
21930947 |
gatgggtgttgtccaacagagctcattggtacaactaatgaaattgttaaaaaatgcaatggtttaccgctagcaattgttgccatcggtggacttttat |
21931046 |
T |
|
| Q |
252 |
ctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattcccatttgaccagaataaaaaagatttt |
351 |
Q |
| |
|
|||||| |||| ||||| ||||| |||||| ||| ||| |||||| | | ||||||||||| || ||||| ||| | | | |||||| | ||||| |
|
|
| T |
21931047 |
ctacaagagagaaaaatgtgtttgagtggcagcgatttagagaaaatctaaatttagagctaaagacagattcacatctaattgggataaaagaaatttt |
21931146 |
T |
|
| Q |
352 |
aggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagattatgaagttaaatcaaagagagtga |
449 |
Q |
| |
|
| || | || ||| |||||||||||| ||||| || |||| || || ||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21931147 |
aagtttaagttatgatgatttgccttactatctcaagccatgcttcttgtattttggagtatatccagaagattatgaagttaaatcaaagagagtga |
21931244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 52 - 452
Target Start/End: Complemental strand, 30989345 - 30988945
Alignment:
| Q |
52 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
151 |
Q |
| |
|
|||||| |||||||| | ||||||||||| ||| | |||||||||| |||| ||||||| | || |||||||||||||||||||| ||||||| |
|
|
| T |
30989345 |
ttgtaaaaaatcttcttatattgaagtgcttgagttgcaacctttaaatgaacaacaatctttggagttgttcaataagaaggcattcagatttgaccat |
30989246 |
T |
|
| Q |
152 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttat |
251 |
Q |
| |
|
| || ||||||||||| |||||||||| |||||||| |||||||| || ||| || || || ||||| ||||||||||| | ||||| || ||||| | |
|
|
| T |
30989245 |
ggtggttgttgtccaaaggagctcattggtatagcttatgaaattgttaaaaaatgtaacggtttaccgctagcaattgttgccattggaggacttttgt |
30989146 |
T |
|
| Q |
252 |
ctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattcccatttgaccagaataaaaaagatttt |
351 |
Q |
| |
|
|| |||| |||| ||||| ||||| ||||| |||| |||||| ||| | | ||||||||||| ||| ||| | ||| | | |||||| | |||| |
|
|
| T |
30989145 |
ctgcaaaagagaaaaatgtgtttgagtggcaaagatttagtgagaatctaagtttagagctaatgaaagatacacatctagttgggataaaagaagtttt |
30989046 |
T |
|
| Q |
352 |
aggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagattatgaagttaaatcaaagagagtgatt |
451 |
Q |
| |
|
||| | || || |||||||||||| | ||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30989045 |
aggcttaagttacgatgatttgccttactctctcaagtcatgcttgttgtattttggaatatatccagaagattatgaagttaaatcaaagagattgatt |
30988946 |
T |
|
| Q |
452 |
c |
452 |
Q |
| |
|
| |
|
|
| T |
30988945 |
c |
30988945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 62 - 452
Target Start/End: Original strand, 22028436 - 22028826
Alignment:
| Q |
62 |
tcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgtt |
161 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||| || ||||||||| | || |||||||||||||| |||| || |||| | || || |||| |
|
|
| T |
22028436 |
tcttcttttattgaggtgcatgaactgcaacctttatctctagaacaatctttggagttgttcaataagaattcattcaaaattgattgtgatgggtgtt |
22028535 |
T |
|
| Q |
162 |
gtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaagga |
261 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||||| || ||| |||| || ||||| ||||||||||| | || ||||| ||||||||||||| || |
|
|
| T |
22028536 |
gtccaaacgagctcattggtatagctgatgaaattgttaaaaaatgcagtggtttaccgctagcaattgttgccatcggtggccttttatctacaagaga |
22028635 |
T |
|
| Q |
262 |
gagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattcccatttgaccagaataaaaaagattttaggtcttagc |
361 |
Q |
| |
|
|| ||||| ||||| ||||||| || ||| ||| || ||| || |||||||| | || | ||| | | | ||| |||| |||||| || | || |
|
|
| T |
22028636 |
gaaaaatgtgtttgagtggcagatatttagagaacatctgaattcagagctaaatacaaatgcacatctaattgggatagaaaaaattttaagtttaagt |
22028735 |
T |
|
| Q |
362 |
tatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagattatgaagttaaatcaaagagagtgattc |
452 |
Q |
| |
|
||| |||||||||||| ||||| || |||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22028736 |
tatgatgatttgccttactatctcaagccatgcttgttgtattttggagtatatccagaagattatgaagttaaatcaaagagagtgattc |
22028826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 52 - 443
Target Start/End: Complemental strand, 22615308 - 22614920
Alignment:
| Q |
52 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
151 |
Q |
| |
|
|||||||| ||||||||| | |||||||||| | ||||||||||||||||||||||| | || ||||| |||||||||||||||||||||||| |
|
|
| T |
22615308 |
ttgtaagagatcttcgttagtcaaagtgcatgagttgcaacctttaactgaagaacaatctctggagttgtttaataagaaggcatttcaatttgac--- |
22615212 |
T |
|
| Q |
152 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttat |
251 |
Q |
| |
|
|| | ||||||||||||||||||||||||||| ||| ||| |||| || ||| ||||| || ||||||||||||||||| | || || |||||||||| |
|
|
| T |
22615211 |
aaatgttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgttgccatcggaggtcttttat |
22615112 |
T |
|
| Q |
252 |
ctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgact-ttagagctaaggaatgattcccatttgaccagaataaaaaagattt |
350 |
Q |
| |
|
|| || || | |||| || | || ||| |||| | | |||||||| | ||| |||||||||| || |||||| |||| | | || ||| |||||| |
|
|
| T |
22615111 |
ctttaagagataaaaattcaatcgagtggaagaggttttgtgaaaatct-actcttagagctaaacaaggattccaatttaattgggattaaagagattt |
22615013 |
T |
|
| Q |
351 |
taggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagattatgaagttaaatcaaaga |
443 |
Q |
| |
|
|| || | || ||| |||||||||||| ||||||| |||||||||||| ||||||||| | || |||||||| |||||| || |||| |||| |
|
|
| T |
22615012 |
taagtttgagttataatgatttgccttactatcttagatcatgtttgttgtattttggattatacccagaagactatgaaattgaatctaaga |
22614920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 289 - 452
Target Start/End: Complemental strand, 22628338 - 22628175
Alignment:
| Q |
289 |
tagtgaaaatatgactttagagctaaggaatgattcccatttgaccagaataaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaa |
388 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| | ||| ||| |||||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
22628338 |
tagtgaaaatatgactttagagctaaacaaggattcccatttgactcgggtaagaaaagttttaggttttagctacaatgatatgcctttttatcttaaa |
22628239 |
T |
|
| Q |
389 |
tcatgtttgttatattttggaatgtatccagaagattatgaagttaaatcaaagagagtgattc |
452 |
Q |
| |
|
|||||| ||| ||||||||| | ||||||||| ||||||| ||| ||||||||||| |||||| |
|
|
| T |
22628238 |
tcatgtgtgtcgtattttggactatatccagaatattatgaggttgaatcaaagagattgattc |
22628175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 123 - 449
Target Start/End: Original strand, 22105205 - 22105531
Alignment:
| Q |
123 |
tcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccact |
222 |
Q |
| |
|
|||||||||||| ||| ||||||| | || || |||||||||||||||||||||| ||||||| ||| |||| || ||| ||||| || ||||| || |
|
|
| T |
22105205 |
tcaataagaaggtattcaaatttgattgtgatgggtgttgtccaaaagagctcattggtatagctaatgacattgttaaaaaatgcaatggtttaccgct |
22105304 |
T |
|
| Q |
223 |
agcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgat |
322 |
Q |
| |
|
||||||||| | || ||||| ||||||||||||| |||| | || ||||| |||||||||| ||| ||| || ||| || |||||||| || || |
|
|
| T |
22105305 |
agcaattgttgccataggtggccttttatctacaatagagaatagtgtgtttgagtggcagagatttagagaacatctgaattcagagctaaagacaaat |
22105404 |
T |
|
| Q |
323 |
tcccatttgaccagaataaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaag |
422 |
Q |
| |
|
| ||| | | | ||| |||| |||||| || | || ||| |||||||||||| ||||| || ||||| ||||| || |||||| | |||||||||| |
|
|
| T |
22105405 |
gcacatctaattgggatagaaaaaattttaagtttaagttatgatgatttgccttactatctcaagtcatgcttgttgtactttggagtatatccagaag |
22105504 |
T |
|
| Q |
423 |
attatgaagttaaatcaaagagagtga |
449 |
Q |
| |
|
|||||||||||||||| |||||||||| |
|
|
| T |
22105505 |
attatgaagttaaatcgaagagagtga |
22105531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 119 - 447
Target Start/End: Original strand, 22179910 - 22180238
Alignment:
| Q |
119 |
ttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttac |
218 |
Q |
| |
|
|||||||||||||||||||| |||||||| || || |||| || ||||||| |||||| ||||||| |||||||| || ||| ||||| || |||| |
|
|
| T |
22179910 |
ttgttcaataagaaggcattcaaatttgacaatgacgggtgttttcaaaaagaggtcattggtatagctaatgaaattgttaaaaaatgcaatggtttac |
22180009 |
T |
|
| Q |
219 |
cactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaa |
318 |
Q |
| |
|
| ||||||||||| | || ||||| ||||||||||||| |||| ||| | | ||| ||| |||| | ||| || ||| | | ||||||||||| || |
|
|
| T |
22180010 |
cgctagcaattgttgccatcggtggacttttatctacaagagagaaaaaagtgtctgagtggaagagttttagagataatctaaatttagagctaaagac |
22180109 |
T |
|
| Q |
319 |
tgattcccatttgaccagaataaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatcca |
418 |
Q |
| |
|
||| ||| ||| | |||||| | ||||||| | | || ||| |||||||||||| ||||| || ||||||||||| ||||||||| | |||||| |
|
|
| T |
22180110 |
agatatacatctgattgggataaaagaaattttagctttaagttatgatgatttgccttactatctcaagtcatgtttgttgtattttggagtatatcca |
22180209 |
T |
|
| Q |
419 |
gaagattatgaagttaaatcaaagagagt |
447 |
Q |
| |
|
|| ||||||||||||||||| |||||||| |
|
|
| T |
22180210 |
gaggattatgaagttaaatcgaagagagt |
22180238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 94 - 452
Target Start/End: Original strand, 21946092 - 21946450
Alignment:
| Q |
94 |
tttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaa |
193 |
Q |
| |
|
||||||| |||||||||| | || ||||| ||||||||||||||| ||||||||| | || |||| |||||| ||||| |||| ||||||| |||| |
|
|
| T |
21946092 |
tttaactcaagaacaatctttggagttgtttaataagaaggcatttaaatttgactatggtgggtgttatccaaatgagctaattggtatagctaatgaa |
21946191 |
T |
|
| Q |
194 |
attgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtg |
293 |
Q |
| |
|
|||| | ||| || || || ||||| ||||||||| |||| ||||| ||||||||||| | |||| |||| | ||| |||||||||| ||| | |
|
|
| T |
21946192 |
attgtaaaaaaatggaatggtttaccgttagcaattgctgctatcggtggccttttatctacgagagagaaaaatttgtctgagtggcagagatttagag |
21946291 |
T |
|
| Q |
294 |
aaaatatgactttagagctaaggaatgattcccatttgaccagaataaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatg |
393 |
Q |
| |
|
||||| | | ||||||||||| || ||| | || | | | |||||| | ||||| || | || ||| |||||||||||| ||||| || ||||| |
|
|
| T |
21946292 |
aaaatctaaatttagagctaaagacagatacagatctaattgggataaaagaagttttaagtttaagttatgatgatttgccttgctatctcaagtcatg |
21946391 |
T |
|
| Q |
394 |
tttgttatattttggaatgtatccagaagattatgaagttaaatcaaagagagtgattc |
452 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21946392 |
cttgttttattttggagtatatccagaagattatgaagttaaatcgaagagagtgattc |
21946450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 452
Target Start/End: Original strand, 21937579 - 21937979
Alignment:
| Q |
52 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
151 |
Q |
| |
|
|||||| |||||||| || |||||||| | ||| | ||| ||||||| | |||||||| | || |||||||||||||||||||| ||||||||| |
|
|
| T |
21937579 |
ttgtaaaaaatcttctttcattgaagttcttgagttgcaatgtttaactcatgaacaatctttggagttgttcaataagaaggcattcaaatttgactat |
21937678 |
T |
|
| Q |
152 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttat |
251 |
Q |
| |
|
|| || ||||||||||||||||| | || |||| || |||||||| | ||| ||||| || ||||| ||||||||||| | || ||||| ||||||| |
|
|
| T |
21937679 |
gatgggtgttgtccaaaagagctaaatggtatatctaatgaaattgtaaaaaaatgcaatggtttaccgctagcaattgttgccatcggtggccttttat |
21937778 |
T |
|
| Q |
252 |
ctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattcccatttgaccagaataaaaaagatttt |
351 |
Q |
| |
|
|||||| |||| ||||| ||||| ||| |||||| ||| |||||| | | ||||||| ||| || || | ||| | | | ||||| | ||||| |
|
|
| T |
21937779 |
ctacaagagagaaaaatgtgtttgagtggaagagatttagagaaaatctaaatttagagttaaagagaaatacacatctaattgggataaatgaaatttt |
21937878 |
T |
|
| Q |
352 |
aggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagattatgaagttaaatcaaagagagtgatt |
451 |
Q |
| |
|
| || | || ||| |||||||||||| ||||| || ||||| ||||| ||||||||| | ||||||||||||| |||| ||| | |||||||||| ||| |
|
|
| T |
21937879 |
aagtttaagttatgatgatttgccttactatctcaagtcatgcttgttgtattttggagtatatccagaagattttgaaattagaccaaagagagtcatt |
21937978 |
T |
|
| Q |
452 |
c |
452 |
Q |
| |
|
| |
|
|
| T |
21937979 |
c |
21937979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 231
Target Start/End: Complemental strand, 22358042 - 22357866
Alignment:
| Q |
52 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
151 |
Q |
| |
|
||||||||||||||| ||| |||||||| |||||||| || ||| |||| ||||||||| |||| |||||||||||||||||||| || |||||| |
|
|
| T |
22358042 |
ttgtaagaaatcttcttttgttgaagtgtatgaactaaaaggtttgactgtagaacaatcttttgagttgttcaataagaaggcattcca---tgactta |
22357946 |
T |
|
| Q |
152 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgt |
231 |
Q |
| |
|
| ||| |||||||| || | || ||||||||| ||| |||||| || ||| ||||| || ||||||||||||||||| |
|
|
| T |
22357945 |
aatggacgttgtccagaaaatcttattgatatatcttccaaaattgttaaaaaatgcaaaggattaccactagcaattgt |
22357866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 452
Target Start/End: Original strand, 22053446 - 22053532
Alignment:
| Q |
366 |
atgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagattatgaagttaaatcaaagagagtgattc |
452 |
Q |
| |
|
|||||||||||| ||||| | ||||| ||||| ||||||||| | ||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
22053446 |
atgatttgccttactatctcgagtcatgcttgttgtattttggagtatatccagaagattatgaagttaattcaaagcgagtgattc |
22053532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 253
Target Start/End: Complemental strand, 22436671 - 22436476
Alignment:
| Q |
55 |
taagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaa |
154 |
Q |
| |
|
||||| |||||| ||| ||||||| |||||||| ||| ||||||||||||| |||| | || |||||||||||||||||||| || | ||||| |
|
|
| T |
22436671 |
taagagatcttcttttgttgaagtacatgaacttcaaggtttaactgaagaaaaatctttagaattgttcaataagaaggcattcca---taacttgagt |
22436575 |
T |
|
| Q |
155 |
ggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatct |
253 |
Q |
| |
|
|||||||||||| || | || ||||||||| ||| |||||| || ||| ||||| || ||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
22436574 |
ggatgttgtccacaaaatcttattgatatatcttccaaaattgttaaaaaatgcaaaggattacctctagcaattgtagtcactggtggtcttttatct |
22436476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 22431213 - 22431133
Alignment:
| Q |
52 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaa |
132 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||| || |||||| |||||| |||| | || |||||||||||||| |
|
|
| T |
22431213 |
ttgtaagaaatcttcttttgttgaagtgcatgaacttaaaggtttaaccgaagaaaaatctttagaattgttcaataagaa |
22431133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 417
Target Start/End: Original strand, 3722268 - 3722359
Alignment:
| Q |
326 |
catttgaccagaataaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatcc |
417 |
Q |
| |
|
|||||||| || |||| || ||||||| ||||||| ||| |||||||||||| |||| |||||||| ||||||| ||||| |||||||| |
|
|
| T |
3722268 |
catttgactagtataataaggattttatgtcttagttatgatgatttgccttaccatctgaaatcatgcatgttatactttggcatgtatcc |
3722359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 22367967 - 22367884
Alignment:
| Q |
52 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggc |
135 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||| || ||||| ||||||| |||| | || ||||||||||||||||| |
|
|
| T |
22367967 |
ttgtaagaaatcttcttttgttgaagtgcataaacttgaaggtttaagtgaagaaaaatctttagaattgttcaataagaaggc |
22367884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 452
Target Start/End: Complemental strand, 18966741 - 18966627
Alignment:
| Q |
338 |
ataaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagattatgaagttaaat |
437 |
Q |
| |
|
||||| || ||||||||| | |||||| |||||||||||| ||||| || ||||| |||| ||||||||| | | |||| ||||||||||| |||| | |
|
|
| T |
18966741 |
ataaacaaaattttaggtttaagctatgatgatttgccttactatctcaagtcatgcttgtagtattttggagtatgtccataagattatgaaattaatt |
18966642 |
T |
|
| Q |
438 |
caaagagagtgattc |
452 |
Q |
| |
|
|||| |||| |||| |
|
|
| T |
18966641 |
taaagcgagtaattc |
18966627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 22208618 - 22208655
Alignment:
| Q |
218 |
ccactagcaattgtgactattggtggtcttttatctac |
255 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
22208618 |
ccacttgcaattgtggctattggtggtcttttatctac |
22208655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 18966990 - 18966946
Alignment:
| Q |
89 |
caacctttaactgaagaacaatcaattgatttgttcaataagaag |
133 |
Q |
| |
|
||||||||||| ||||||||||| || || ||||||||||||||| |
|
|
| T |
18966990 |
caacctttaaccgaagaacaatctatagagttgttcaataagaag |
18966946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 280
Target Start/End: Complemental strand, 22442739 - 22442560
Alignment:
| Q |
98 |
actgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattg |
197 |
Q |
| |
|
|||| ||||||||| | || ||||||||||||||||||||||| |||||| | ||| ||||||||||| | || |||| |||| ||| |||||| |
|
|
| T |
22442739 |
actgtagaacaatctttggagttgttcaataagaaggcatttca---tgacttaaacggacgttgtccaaaaaatcttattggtatatcttccaaaattg |
22442643 |
T |
|
| Q |
198 |
ctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatgg |
280 |
Q |
| |
|
| ||| ||||| || ||||||||||||||||| ||||||||| ||||| || | || || |||||| || |||||||| |
|
|
| T |
22442642 |
ttgaaaaatgcaatggattaccactagcaattgtagtcattggtggtattttagctcccaaagatagaaatacaattgaatgg |
22442560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 206 - 459
Target Start/End: Original strand, 40580513 - 40580767
Alignment:
| Q |
206 |
tgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactt |
305 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40580513 |
tgcaagggcttaccactagcaattgttactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatttagtgaaaatatgactt |
40580612 |
T |
|
| Q |
306 |
tagagctaaggaatgattcccatttgaccagaataaaaaagattttaggtcttagctatcatgatttgc-ctttttatcttaaatcatgtttgttatatt |
404 |
Q |
| |
|
|||||||||||||||||||| |||||| | | ||||||||||||||||| ||||||| || |||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
40580613 |
tagagctaaggaatgattccgatttgatcgggataaaaaagattttaggatttagctacgataatttgctttttttatcttaaatcctgtttgttatatt |
40580712 |
T |
|
| Q |
405 |
ttggaatgtatccagaagattatgaagttaaatcaaagagagtgattctacagtg |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40580713 |
ttggaatgtatccagaagattatgaagttaaatcaaagagagtgattctacagtg |
40580767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 40580390 - 40580512
Alignment:
| Q |
28 |
aagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaat |
127 |
Q |
| |
|
||||| || ||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
40580390 |
aagaagtatggatgttgcagtgtattgtaagaaattttcttttattgaagtgcatgaactacaacctttaacagaagaaaaatcatttgatttgttcaac |
40580489 |
T |
|
| Q |
128 |
aagaaggcatttcaatttgactt |
150 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
40580490 |
aagaaggcatttcaatttgactt |
40580512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1439 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold1439
Description:
Target: scaffold1439; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 1665 - 1454
Alignment:
| Q |
20 |
attaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatt |
119 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
1665 |
attaccacaagaaatatggatgttgctgtgtattgtaagaaatcttcttttattgaagtgcatgaactacaacctttaactgaagaaaaatcatttgatt |
1566 |
T |
|
| Q |
120 |
tgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttacc |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
1565 |
tgtttaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatatcttttgaaatcgctaggaagtgcaagggcttacc |
1466 |
T |
|
| Q |
220 |
actagcaattgt |
231 |
Q |
| |
|
||||||||||| |
|
|
| T |
1465 |
cctagcaattgt |
1454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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