View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12541_high_5 (Length: 261)
Name: NF12541_high_5
Description: NF12541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12541_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 24985625 - 24985847
Alignment:
| Q |
20 |
tttgagaaaattttgtttaatttattcttattactatgtaaactttattgagtggagaagttgcgaaaacacatgatgatatacacgacgcagtaacccc |
119 |
Q |
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| T |
24985625 |
tttgagaaaattttgtttaatttattcttattactatgtaaactttattgagtggagaagttgcgaaaacacatgatgatatacacgatgcagtaatccc |
24985724 |
T |
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| Q |
120 |
tttatatacaatgaactatactgactaactatgtttacttgactaccaagtaaatccaacgatcggattaatctctgactaactaactcaattttatata |
219 |
Q |
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| T |
24985725 |
tttatatac----------agtgactaactatgtttacttgactaccaagtaaatcctacgatcggattaatctctgactaactaactcaattttatata |
24985814 |
T |
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| Q |
220 |
cacgacgcaataacccctttatatacagtgaac |
252 |
Q |
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||||||| | ||||||||||||||||||||||| |
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| T |
24985815 |
cacgacgtagtaacccctttatatacagtgaac |
24985847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 24985810 - 24985928
Alignment:
| Q |
98 |
atatacacgacgcagtaacccctttatatacaatgaactatactgactaactatgtttacttgactaccaagtaaatccaacgatcggattaatctctga |
197 |
Q |
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| T |
24985810 |
atatacacgacgtagtaacccctttatatacagtgaactataccgactaaccatgtttacttgactaccaagtaaatcctacgatcgggttaatctttga |
24985909 |
T |
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| Q |
198 |
ctaactaactcaattttat |
216 |
Q |
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| T |
24985910 |
ctaactaaatcaattttat |
24985928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 173
Target Start/End: Complemental strand, 38163260 - 38163146
Alignment:
| Q |
59 |
aaactttattgagtggagaagttgcgaaaacacatgatgatatacacgacgcagtaacccctttatatacaatgaactatactgactaactatgtttact |
158 |
Q |
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| T |
38163260 |
aaactttattgaatggagaagttgtgaaaacttatgatgaaatacatagtgcaataacccttttatatagagtgggttatgctaactaactatggttact |
38163161 |
T |
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| Q |
159 |
tgactaccaagtaaa |
173 |
Q |
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||||||||||||||| |
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| T |
38163160 |
tgactaccaagtaaa |
38163146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 22311045 - 22311105
Alignment:
| Q |
113 |
taacccctttatatacaatgaactatactgactaactatgtttacttgactaccaagtaaa |
173 |
Q |
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| T |
22311045 |
taacccctttatatagaatgaattatgctaactaactatggttactcgactatcaagtaaa |
22311105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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