View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12541_low_10 (Length: 258)

Name: NF12541_low_10
Description: NF12541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12541_low_10
NF12541_low_10
[»] chr7 (18 HSPs)
chr7 (11-144)||(47295748-47295881)
chr7 (11-144)||(21592944-21593077)
chr7 (14-144)||(18153131-18153261)
chr7 (11-144)||(18185624-18185757)
chr7 (14-140)||(30770257-30770384)
chr7 (11-144)||(29164848-29164982)
chr7 (41-144)||(20093566-20093669)
chr7 (12-144)||(21802450-21802583)
chr7 (12-115)||(22703896-22704000)
chr7 (12-144)||(9549035-9549168)
chr7 (68-144)||(7595406-7595482)
chr7 (11-143)||(2250059-2250193)
chr7 (61-144)||(22705649-22705732)
chr7 (11-144)||(28794094-28794227)
chr7 (77-144)||(30765047-30765114)
chr7 (208-242)||(31206533-31206567)
chr7 (208-242)||(31209969-31210003)
chr7 (74-144)||(38612620-38612690)
[»] chr6 (23 HSPs)
chr6 (14-144)||(29095084-29095214)
chr6 (33-140)||(7968565-7968672)
chr6 (13-144)||(18014524-18014656)
chr6 (40-144)||(19860118-19860222)
chr6 (12-144)||(4409196-4409329)
chr6 (12-121)||(8306064-8306170)
chr6 (11-144)||(12738494-12738628)
chr6 (40-144)||(18736029-18736133)
chr6 (11-140)||(23574393-23574523)
chr6 (12-143)||(18043340-18043472)
chr6 (11-144)||(18258661-18258795)
chr6 (11-144)||(14910604-14910739)
chr6 (39-144)||(15349695-15349800)
chr6 (11-144)||(29482590-29482724)
chr6 (38-144)||(15119787-15119891)
chr6 (12-144)||(24438628-24438760)
chr6 (38-144)||(18728948-18729054)
chr6 (39-144)||(15319045-15319150)
chr6 (88-144)||(17757084-17757140)
chr6 (68-144)||(3876375-3876451)
chr6 (75-140)||(23524128-23524193)
chr6 (40-144)||(15369691-15369795)
chr6 (38-105)||(19885769-19885837)
[»] chr5 (16 HSPs)
chr5 (11-140)||(36712720-36712849)
chr5 (11-144)||(5590764-5590897)
chr5 (11-144)||(23495348-23495481)
chr5 (11-144)||(20899663-20899796)
chr5 (18-144)||(33622557-33622686)
chr5 (11-144)||(28068090-28068224)
chr5 (11-144)||(38608266-38608400)
chr5 (12-144)||(42792481-42792614)
chr5 (38-144)||(15620258-15620364)
chr5 (12-144)||(5931190-5931323)
chr5 (11-144)||(22922705-22922839)
chr5 (71-144)||(41037712-41037785)
chr5 (11-144)||(22922108-22922242)
chr5 (83-144)||(19329991-19330052)
chr5 (12-96)||(8244511-8244596)
chr5 (40-113)||(23927179-23927252)
[»] chr4 (21 HSPs)
chr4 (11-144)||(17282557-17282690)
chr4 (11-144)||(25239694-25239827)
chr4 (11-144)||(13861313-13861446)
chr4 (12-144)||(3270546-3270679)
chr4 (12-144)||(10985780-10985912)
chr4 (12-144)||(21332611-21332743)
chr4 (12-144)||(12885280-12885413)
chr4 (12-144)||(3268334-3268467)
chr4 (41-142)||(9901770-9901871)
chr4 (40-140)||(49402721-49402821)
chr4 (38-105)||(12217588-12217655)
chr4 (11-76)||(18284661-18284725)
chr4 (38-144)||(26780882-26780988)
chr4 (11-71)||(10422046-10422106)
chr4 (14-140)||(8082047-8082173)
chr4 (208-242)||(6671285-6671319)
chr4 (12-112)||(28891910-28892009)
chr4 (38-144)||(34845524-34845630)
chr4 (74-144)||(45313209-45313279)
chr4 (208-242)||(6667613-6667647)
chr4 (88-144)||(16396333-16396389)
[»] chr8 (18 HSPs)
chr8 (11-144)||(25820716-25820849)
chr8 (12-144)||(2085809-2085942)
chr8 (11-93)||(1788650-1788732)
chr8 (12-144)||(18040548-18040680)
chr8 (40-140)||(10532860-10532960)
chr8 (12-144)||(32009080-32009213)
chr8 (11-144)||(7454733-7454867)
chr8 (47-144)||(18574084-18574181)
chr8 (38-144)||(41280876-41280982)
chr8 (11-144)||(7999649-7999781)
chr8 (11-144)||(24060557-24060691)
chr8 (14-113)||(33273604-33273704)
chr8 (62-144)||(11709419-11709501)
chr8 (12-140)||(24033762-24033894)
chr8 (206-242)||(1788791-1788827)
chr8 (38-105)||(15604526-15604593)
chr8 (38-105)||(15612877-15612944)
chr8 (74-139)||(22609564-22609631)
[»] chr1 (11 HSPs)
chr1 (11-144)||(24973953-24974086)
chr1 (11-144)||(21817805-21817938)
chr1 (11-144)||(22186053-22186186)
chr1 (11-115)||(21815619-21815723)
chr1 (11-144)||(8990828-8990962)
chr1 (12-144)||(19442177-19442310)
chr1 (12-141)||(19967488-19967618)
chr1 (38-144)||(8995505-8995610)
chr1 (40-144)||(9858996-9859104)
chr1 (38-140)||(38621830-38621932)
chr1 (20-105)||(170684-170769)
[»] scaffold0265 (2 HSPs)
scaffold0265 (11-144)||(14871-15004)
scaffold0265 (11-115)||(17086-17190)
[»] scaffold0362 (1 HSPs)
scaffold0362 (11-144)||(7417-7549)
[»] scaffold0096 (1 HSPs)
scaffold0096 (11-144)||(10939-11072)
[»] chr2 (12 HSPs)
chr2 (12-144)||(41266262-41266396)
chr2 (38-144)||(42534189-42534295)
chr2 (11-144)||(27347170-27347302)
chr2 (11-144)||(23929796-23929930)
chr2 (12-144)||(23755885-23756018)
chr2 (38-140)||(25134004-25134106)
chr2 (12-140)||(3770260-3770389)
chr2 (12-144)||(29568315-29568448)
chr2 (11-144)||(3105203-3105337)
chr2 (62-144)||(26155049-26155131)
chr2 (43-144)||(19092753-19092854)
chr2 (12-90)||(26159154-26159233)
[»] scaffold0084 (1 HSPs)
scaffold0084 (44-144)||(54670-54770)
[»] scaffold0034 (1 HSPs)
scaffold0034 (12-144)||(47482-47615)
[»] scaffold0002 (2 HSPs)
scaffold0002 (11-144)||(391458-391592)
scaffold0002 (13-144)||(380763-380894)
[»] chr3 (10 HSPs)
chr3 (36-144)||(16853075-16853183)
chr3 (11-144)||(22915051-22915185)
chr3 (82-144)||(19790346-19790408)
chr3 (11-86)||(19773385-19773462)
chr3 (12-92)||(1998006-1998087)
chr3 (69-142)||(16914764-16914837)
chr3 (37-106)||(22006518-22006587)
chr3 (37-106)||(22014035-22014104)
chr3 (87-144)||(44635823-44635880)
chr3 (40-113)||(36639623-36639696)
[»] scaffold0042 (2 HSPs)
scaffold0042 (38-144)||(68700-68806)
scaffold0042 (38-144)||(74872-74978)
[»] scaffold0083 (1 HSPs)
scaffold0083 (11-142)||(4265-4397)
[»] scaffold0058 (2 HSPs)
scaffold0058 (13-144)||(1609-1741)
scaffold0058 (11-144)||(15364-15498)
[»] scaffold0170 (1 HSPs)
scaffold0170 (40-144)||(16382-16487)
[»] scaffold0008 (2 HSPs)
scaffold0008 (11-144)||(253312-253446)
scaffold0008 (69-144)||(242731-242806)
[»] scaffold0299 (1 HSPs)
scaffold0299 (12-115)||(19150-19254)
[»] scaffold0280 (1 HSPs)
scaffold0280 (15-144)||(1107-1237)
[»] scaffold0026 (1 HSPs)
scaffold0026 (12-144)||(151357-151490)
[»] scaffold0989 (1 HSPs)
scaffold0989 (12-115)||(1617-1721)
[»] scaffold0150 (1 HSPs)
scaffold0150 (38-144)||(30124-30230)
[»] scaffold0111 (1 HSPs)
scaffold0111 (38-144)||(2897-3002)
[»] scaffold0192 (1 HSPs)
scaffold0192 (61-144)||(12373-12456)
[»] scaffold0013 (1 HSPs)
scaffold0013 (62-144)||(37292-37374)
[»] scaffold0025 (1 HSPs)
scaffold0025 (11-140)||(86433-86563)
[»] scaffold0011 (1 HSPs)
scaffold0011 (40-106)||(20389-20455)
[»] scaffold0063 (1 HSPs)
scaffold0063 (62-144)||(36846-36928)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 47295881 - 47295748
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  47295881 cagagagtgagggtttgagaggaagaaagattctaccttggggactgcattgagtcccctatttatagaggtggagggctgcagagccgttgtaatggca 47295782  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||||||||||||||||||||||||||||||    
T  47295781 caccttactctgacggttacgaaatcgtgggaag 47295748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 21593077 - 21592944
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||    
T  21593077 cagagagtgagggttttagaggaagaaagcttctaccttggggactgcattgagtcccctatttatagaggtggagggctgctgagccgttgtaatggca 21592978  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||||||||||||||| |||||||||||||    
T  21592977 caccttactctgacggttacaaaatcgtgggaag 21592944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 18153131 - 18153261
Alignment:
Q  14 agagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacac 113  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| ||| ||||||||| |||||     
T  18153131 agagtgagggtttgagaggaagaaagattctaccttggggaatgcattgagtcccctatttatagaggtggagggctgccgagtcgttgtaatggcacag 18153230  T
Q  114 cttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||||||||||||||||| ||||||||    
T  18153231 cttactctgacggttacgaaatggtgggaag 18153261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 18185624 - 18185757
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    ||||||||||||||||||||||||||||||||||||  ||| |||||||||||||| |||||| ||| | ||||||||||||||||||||| |||  |||    
T  18185624 cagagagtgagggtttgagaggaagaaagattctacgctggggactgcattgagtcccctattaataaatgtggagggctgcagagccgttttaacggca 18185723  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||||||||||||||||||||||| ||||||    
T  18185724 caccttactctgacggttacgaaatcgcgggaag 18185757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 30770384 - 30770257
Alignment:
Q  14 agagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcac 111  Q
    ||||||||||||| ||||||||| |  ||||||||||||| ||||||  |||||| ||||||||||||||||||| ||||||||||||||||||| ||||    
T  30770384 agagtgagggttt-agaggaagagatagattctaccttggggactgctgtgagtcccctatttatagaggtggagtgctgcagagccgttgtaatggcac 30770286  T
Q  112 accttactctgacggttacgaaatcgtgg 140  Q
    ||||  ||||| |||||||||||||||||    
T  30770285 acctggctctggcggttacgaaatcgtgg 30770257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 29164848 - 29164982
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||||||||| ||||||||| |  ||||||||||||| ||||||  |||||| |||||||||||||||||| ||||||||||||||||||||      
T  29164848 cagagagtgagggttt-agaggaagagatagattctaccttggggactgctatgagtcccctatttatagaggtggacggctgcagagccgttgtaatga 29164946  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||| |||||    |||||||||||||||||||    
T  29164947 cacacctgactctagaagttacgaaatcgtgggaag 29164982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 20093566 - 20093669
Alignment:
Q  41 ttctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgg 140  Q
    ||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||  | ||  |||||||||||||||||    
T  20093566 ttctaccttggggactgccgtgagtcccctatttatagaggtggagggctgcagagccgttgtaatggcacacctggccctagcggttacgaaatcgtgg 20093665  T
Q  141 gaag 144  Q
    ||||    
T  20093666 gaag 20093669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 21802450 - 21802583
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||||| |  ||||||||||||| ||||||  |||||| ||||||||||||||| ||||||| ||||||||||||||| ||    
T  21802450 agagagtgagggttt-agaggaagagatagattctaccttggggactgctgtgagtcccctatttatagaggttgagggctacagagccgttgtaatggc 21802548  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||  |||||  |||||||||||||| |||||    
T  21802549 acacctggctctggtggttacgaaatcgtaggaag 21802583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 22703896 - 22704000
Alignment:
Q  12 agagagtgagggtttgagagga--agaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||  ||| |||||||||||||| ||||||  |||||| | ||||||||||||||||||||||||||||||||||||| ||    
T  22703896 agagagtgagggttt-agaggacgagatagattctaccttggggactgctgtgagtcccatatttatagaggtggagggctgcagagccgttgtaatggc 22703994  T
Q  110 acacct 115  Q
    ||||||    
T  22703995 acacct 22704000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 9549168 - 9549035
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||||| |  |||| |||||||| |||| | ||||||| ||| |||||| ||||||||||||||||||||||||||   ||    
T  9549168 agagagtgagggttt-agaggaagagatagattttaccttggggactactttgagtcccctttttataaaggtggagggctgcagagccgttgtagaggc 9549070  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||  ||||  |||||||||||||||||||||    
T  9549069 acacctggctctagcggttacgaaatcgtgggaag 9549035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 7595406 - 7595482
Alignment:
Q  68 cctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||  | |||   |||||||||||||||||||    
T  7595406 cctatttatagaggtggagggctgcaaagccgttgtaatagcacacctggcgctggatgttacgaaatcgtgggaag 7595482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 2250193 - 2250059
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    ||||||||||| |||| ||||||||| |  |||||||| |||| |  |||  |||||| ||||| ||||||||||||||| ||||||||||||||||| |    
T  2250193 cagagagtgagagttttagaggaagagatagattctacattggggtttgctatgagtcccctatatatagaggtggagggttgcagagccgttgtaatgg 2250094  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaa 143  Q
    ||||||   || || ||||||| ||||||||||||    
T  2250093 cacaccaggctttggcggttacaaaatcgtgggaa 2250059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 22705649 - 22705732
Alignment:
Q  61 tgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||| | |||||||||||||||||| |||||||||| ||||||| ||||||||  ||||| ||||||||||||| |||||||    
T  22705649 tgagtcccgtatttatagaggtggaggactgcagagccattgtaatggcacacctggctctggcggttacgaaatcatgggaag 22705732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 28794227 - 28794094
Alignment:
Q  11 cagagagtgagggtttgagaggaagaa-agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    |||||| ||||||||| ||||| |||| |||||||||||||| |||||    ||||| ||||| |||| |||||   ||||||| |||||||||||| ||    
T  28794227 cagagaatgagggttt-agagggagaatagattctaccttggggactgttaagagtcccctatatataaaggtgagtggctgcatagccgttgtaatggc 28794129  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||| |   ||||||||||||||||||||||||||    
T  28794128 acacgtgtgtctgacggttacgaaatcgtgggaag 28794094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 30765114 - 30765047
Alignment:
Q  77 agaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||||||||||||||||| |||||| | ||||||||   || ||||| |||||||||||||||||    
T  30765114 agaggtggagggctgcagagctgttgtagtggcacacctaggtccgacgggtacgaaatcgtgggaag 30765047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 31206533 - 31206567
Alignment:
Q  208 gagaacaataaacttatctgtggtgatttgatgtc 242  Q
    |||||||||||||||||||||||||||||||||||    
T  31206533 gagaacaataaacttatctgtggtgatttgatgtc 31206567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 31209969 - 31210003
Alignment:
Q  208 gagaacaataaacttatctgtggtgatttgatgtc 242  Q
    |||||||||||||||||||||||||||||||||||    
T  31209969 gagaacaataaacttatctgtggtgatttgatgtc 31210003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 38612620 - 38612690
Alignment:
Q  74 tatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||||||||  |||||||||||||||||| | |||||   ||||| ||||||| |||||||||||||    
T  38612620 tatagaggtggagatctgcagagccgttgtaatggtacaccaggctctggcggttacaaaatcgtgggaag 38612690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 29095214 - 29095084
Alignment:
Q  14 agagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacac 113  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  29095214 agagtgagggtttgagaggaagaaagattctaccttggggactgcattgagtcccctatttatagaggtggagggctgcagagccgttgtaatggcacac 29095115  T
Q  114 cttactctgacggttacgaaatcgtgggaag 144  Q
    || ||||||||||||||||||||||||||||    
T  29095114 ctaactctgacggttacgaaatcgtgggaag 29095084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 7968672 - 7968565
Alignment:
Q  33 aagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacga 132  Q
    |||| ||||||| |||||| |||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||||||| |||||| |||||||||    
T  7968672 aagatagattctgccttggggactgcattgagtcccctatatatagaggtggagggctgcagagctgttgtaatggcacacctgactctggcggttacga 7968573  T
Q  133 aatcgtgg 140  Q
    ||| ||||    
T  7968572 aattgtgg 7968565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 18014656 - 18014524
Alignment:
Q  13 gagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||||||||  ||||||||| |  ||||||||||||| ||||||  |||||| ||||  ||||||||||||||||||||||||||||||||| |||    
T  18014656 gagagtgagggtta-agaggaagagattgattctaccttggggactgctatgagtcccctacatatagaggtggagggctgcagagccgttgtaatggca 18014558  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||  ||||| |||||||||||||||||||||    
T  18014557 cacctagctctggcggttacgaaatcgtgggaag 18014524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 19860222 - 19860118
Alignment:
Q  40 attctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtg 139  Q
    |||||||||||| ||||||  |||||| ||||||||||||||||||||||||| ||||||||||||| | ||||||  ||||| ||||||||||||||||    
T  19860222 attctaccttggggactgctgtgagtcccctatttatagaggtggagggctgcggagccgttgtaatgggacacctggctctggcggttacgaaatcgtg 19860123  T
Q  140 ggaag 144  Q
    |||||    
T  19860122 ggaag 19860118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 4409196 - 4409329
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||||| |  ||||||||||||| ||||||||||| ||  ||||||||||||||||||||||||| |||||||  ||| ||    
T  4409196 agagagtgagggttt-agaggaagagatagattctaccttggggactgcattgaatcctctatttatagaggtggagggctgcaaagccgttacaatggc 4409294  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||| ||||| ||||||| |||||||| ||||    
T  4409295 acaccttgctctggcggttacaaaatcgtgagaag 4409329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 8306064 - 8306170
Alignment:
Q  12 agagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcac 111  Q
    ||||||||||||||| |||||||||  ||||||||||||| ||||||  |||||| ||||||||||||||||||||| ||||||||||||||||| ||||    
T  8306064 agagagtgagggttt-agaggaaga--gattctaccttggggactgctgtgagtcccctatttatagaggtggagggttgcagagccgttgtaatggcac 8306160  T
Q  112 accttactct 121  Q
    |||| |||||    
T  8306161 acctgactct 8306170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 12738494 - 12738628
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    ||||||||| |||||| ||||||||| |  |||||||||| || ||||||  |||||| ||||||||||||||||||||| ||||||||||||||||| |    
T  12738494 cagagagtgggggttt-agaggaagagatagattctacctaggggactgctatgagtcccctatttatagaggtggagggttgcagagccgttgtaatgg 12738592  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||| ||  || ||||| ||||||||||||||||||    
T  12738593 cacatctggctatgacgattacgaaatcgtgggaag 12738628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 18736029 - 18736133
Alignment:
Q  40 attctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtg 139  Q
    |||||| ||||| ||||||  |||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||  ||||| |||||||||||| |||    
T  18736029 attctagcttggggactgctatgagtcccctatttatagaggtggagggctgctgagccgttgtaatggcacacctggctctggcggttacgaaattgtg 18736128  T
Q  140 ggaag 144  Q
    |||||    
T  18736129 ggaag 18736133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 23574393 - 23574523
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||||||||| ||||||||| |  ||||||||||||  |||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |    
T  23574393 cagagagtgagggttt-agaggaagagatagattctaccttgtggactgctttgagtcccctatttatagaggtagagggctgcagagccgttgtaatgg 23574491  T
Q  109 cacaccttactctgacggttacgaaatcgtgg 140  Q
    ||||| |  ||||| | |||||||| ||||||    
T  23574492 cacacttggctctggctgttacgaagtcgtgg 23574523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 18043340 - 18043472
Alignment:
Q  12 agagagtgagggtttgagaggaagaaaga--ttctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||||| | |  ||||||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||  |    
T  18043340 agagagtgagggttt-agaggaagagataaattctaccttggggactgcatttagtcccctatttatagaggtggagggctgcaaagccgttgtaatgac 18043438  T
Q  110 acaccttactctgacggttacgaaatcgtgggaa 143  Q
    || | | |||||| ||| ||||||||| ||||||    
T  18043439 acgcatgactctggcgggtacgaaatcatgggaa 18043472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 18258795 - 18258661
Alignment:
Q  11 cagagagtgagggttt-gagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    |||||||||||||||| ||||  || | |||||||||||||| |||||   |||||| ||||||||||||||| |||||||| |||||||||||| | ||    
T  18258795 cagagagtgagggtttagagaaaaatatagattctaccttggagactgttgtgagtcccctatttatagaggtagagggctgtagagccgttgtagtggc 18258696  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||  |||||| ||||||||||| ||||||||    
T  18258695 acacctggctctgatggttacgaaattgtgggaag 18258661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 14910604 - 14910739
Alignment:
Q  11 cagagagtgagggtttgagaggaaga--aaga-ttctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaata 107  Q
    |||||||||||||||| |||||||||   ||| ||||||||||| ||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||     
T  14910604 cagagagtgagggttt-agaggaagagctagatttctaccttggggactgcagtgagtcccctatatatagaggtggagggctgcaaagccgttgtaatg 14910702  T
Q  108 gcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||| |  ||||| | |||||||||| ||||||||    
T  14910703 gcacacatcgctctggcagttacgaaattgtgggaag 14910739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 15349800 - 15349695
Alignment:
Q  39 gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgt 138  Q
    |||||||| |||| ||||||   ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||   |||| |||||||||||||||    
T  15349800 gattctacgttggggactgctaagagtcccctatatatagaggtggagggctgcagagccgttgtgatagcacacctgggtctggcggttacgaaatcgt 15349701  T
Q  139 gggaag 144  Q
    ||||||    
T  15349700 gggaag 15349695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 29482590 - 29482724
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    ||||||||| |||||| ||||||||| |  ||||||||||||| |||| |  |||||| |||||||||||||||||||||||| |||| ||||||||| |    
T  29482590 cagagagtgggggttt-agaggaagagatagattctaccttggggactactatgagtcccctatttatagaggtggagggctgtagagtcgttgtaatgg 29482688  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||   |||  |||||||||||||||||||||    
T  29482689 cacacctggttctagcggttacgaaatcgtgggaag 29482724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 15119891 - 15119787
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcg 137  Q
    |||||||||||||| || ||  ||||||| ||||||||||||||||||| | |||||||||  |||||| ||||||||  ||||| ||||||| ||||||    
T  15119891 agattctaccttggggattg--ttgagtcccctatttatagaggtggagagttgcagagccagtgtaatggcacacctggctctggcggttacaaaatcg 15119794  T
Q  138 tgggaag 144  Q
    |||||||    
T  15119793 tgggaag 15119787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 24438760 - 24438628
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||||| |  |||| |||||||| ||||||  |||||| ||||||||||||||| ||||  ||||||| |||||||||  |    
T  24438760 agagagtgagggttt-agaggaagagatagattataccttgg-gactgctgtgagtcccctatttatagaggtagaggattgcagagtcgttgtaatgac 24438663  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||  ||||  |||||||||||||||||||||    
T  24438662 acacctggctcttgcggttacgaaatcgtgggaag 24438628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 18728948 - 18729054
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcg 137  Q
    |||||||||||||  |||||   |||||| ||||||||||||||||||||||||||||| | ||||||| | ||||||  ||||| ||| ||| ||||||    
T  18728948 agattctaccttgaggactgttatgagtcccctatttatagaggtggagggctgcagagacattgtaatggaacacctggctctggcgggtacaaaatcg 18729047  T
Q  138 tgggaag 144  Q
    |||||||    
T  18729048 tgggaag 18729054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 15319150 - 15319045
Alignment:
Q  39 gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgt 138  Q
    ||||||||||||| ||||||   ||||  ||||| ||||||||||||||||||||||| |||||| || | ||||||   |||| |||||||||||||||    
T  15319150 gattctaccttggggactgctaagagttccctatatatagaggtggagggctgcagagtcgttgtgatggtacacctaggtctggcggttacgaaatcgt 15319051  T
Q  139 gggaag 144  Q
    ||||||    
T  15319050 gggaag 15319045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 17757140 - 17757084
Alignment:
Q  88 gctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  17757140 gctgccgagccgttgtaatggcacaccttactctgacggttacaaaatcgtgggaag 17757084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 3876375 - 3876451
Alignment:
Q  68 cctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||| |||||||||||||||||||||||||||||| |   ||||||| | |||| ||||||||||||||| |||||    
T  3876375 cctatatatagaggtggagggctgcagagccgttgtgaagacacacctaagtctggcggttacgaaatcgtaggaag 3876451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 23524128 - 23524193
Alignment:
Q  75 atagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgg 140  Q
    ||||| |||||||||||||||||| ||||||| ||||||||  ||||| |||||| ||||||||||    
T  23524128 atagacgtggagggctgcagagccattgtaatggcacacctggctctggcggttaagaaatcgtgg 23524193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 15369795 - 15369691
Alignment:
Q  40 attctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtg 139  Q
    |||||||||||| ||||||   |||||  |||| |||||||||||||||||| |||| |||| | || | ||||||   |||| |||||||||||| ||     
T  15369795 attctaccttggggactgctaagagtcctctatatatagaggtggagggctgtagagtcgttatgatggtacacctaggtctggcggttacgaaattgta 15369696  T
Q  140 ggaag 144  Q
    |||||    
T  15369695 ggaag 15369691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 19885769 - 19885837
Alignment:
Q  38 agattctacc-ttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaa 105  Q
    |||||||||| |||| |||||||  ||||| ||| | |||||||| ||| |||||||||||||||||||    
T  19885769 agattctacccttggggactgcaaagagtcccctttatatagaggcggatggctgcagagccgttgtaa 19885837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 36712849 - 36712720
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  36712849 cagagagtgagggtttgagaggaagaaagattctaccttggggactgcattgagtcccctatttatagaggtggagggctgcagagccgttgtaatggca 36712750  T
Q  111 caccttactctgacggttacgaaatcgtgg 140  Q
    ||||| ||||||||||||||||||||||||    
T  36712749 cacctaactctgacggttacgaaatcgtgg 36712720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 5590897 - 5590764
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| |||||||||||||||| |||    
T  5590897 cagagagtaagggtttgagaggaagaaagattctaccttggggactgcattgaatcccctatttatagaggtggagggcagcagagccgttgtaatggca 5590798  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||||||||||||||||||||| ||||||||    
T  5590797 caccttactctgacggttacgaaattgtgggaag 5590764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 23495348 - 23495481
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||||| ||||| ||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  23495348 cagagagtgaaggttttagaggaagagagattctacattggggactgcattgagtcccctatttatagaggtggagggctgcagagccgttgtaatggca 23495447  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||| ||||||||||||||||||||||||||||    
T  23495448 cacctaactctgacggttacgaaatcgtgggaag 23495481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 20899796 - 20899663
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||||||||||||||  ||||||||| |||    
T  20899796 cagagagtgagggttttagaggaagaaagattcaaccttggggactgcattgagtcccctatttataaaggtggagggctgcagattcgttgtaatggca 20899697  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||| ||||||||||||||||||||||||||||    
T  20899696 cacctaactctgacggttacgaaatcgtgggaag 20899663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 33622686 - 33622557
Alignment:
Q  18 tgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacacctta 117  Q
    ||||||||||||||||||||| |||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||    
T  33622686 tgagggtttgagaggaagaaatattctatcttagggactgcattgagtcccctatttatagaggtggagggctgcagagccgttgtaattacacacctta 33622587  T
Q  118 ctctgac---ggttacgaaatcgtgggaag 144  Q
    |||||||   |||||||||||| |||||||    
T  33622586 ctctgacggtggttacgaaatcctgggaag 33622557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 28068224 - 28068090
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaaga--ttctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||||||||| ||||||||| |||  ||||||||| | ||||||  |||||| ||||||||||||||||||||||||||||||||||||||| |    
T  28068224 cagagagtgagggttt-agaggaagagagagattctaccttagggactgctatgagtcccctatttatagaggtggagggctgcagagccgttgtaatgg 28068126  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||  ||||| |||||||||||||||||||||    
T  28068125 cacacctggctctggcggttacgaaatcgtgggaag 28068090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 38608266 - 38608400
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa-gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    |||||||||||||||| ||||| ||||| ||||||||||| | |||||||||||||| |||||||||||||||||||| || ||||||||||||    ||    
T  38608266 cagagagtgagggttttagagggagaaaagattctaccttagggactgcattgagtcccctatttatagaggtggaggtctacagagccgttgtggaggc 38608365  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||  ||||| |||||||||||||||||||||    
T  38608366 acacctggctctggcggttacgaaatcgtgggaag 38608400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 42792481 - 42792614
Alignment:
Q  12 agagagtgagggttt-gagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    ||||| ||||||||| |||||| ||| |||||||||||||| || ||   |||||| |||| ||||||||||||||||||||||||| |||||| | |||    
T  42792481 agagaatgagggtttagagagggagatagattctaccttggggattgttatgagtcccctagttatagaggtggagggctgcagagcagttgtagtggca 42792580  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||  ||||| |||||||||||||||||||||    
T  42792581 cacctggctctggcggttacgaaatcgtgggaag 42792614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 15620364 - 15620258
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcg 137  Q
    |||||||||||||| ||||||  |||||| |||||||||||||||| ||||||| ||||| |||||||| |||||| |  |||||||||||||||||| |    
T  15620364 agattctaccttggggactgctatgagtcccctatttatagaggtgaagggctgtagagctgttgtaatggcacacttggctctgacggttacgaaattg 15620265  T
Q  138 tgggaag 144  Q
    |||||||    
T  15620264 tgggaag 15620258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 5931190 - 5931323
Alignment:
Q  12 agagagtgagggttt-gagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    ||||||||||||||| ||| |  ||| |||||||| ||||| |||||   |||||| |||||||||||||||||||||||||||||||||||||||  ||    
T  5931190 agagagtgagggtttagagggagagatagattctatcttggggactgtcgtgagtcccctatttatagaggtggagggctgcagagccgttgtaatgaca 5931289  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||   |||| |||||| ||||||||||||||    
T  5931290 cacctggttctggcggttatgaaatcgtgggaag 5931323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 22922839 - 22922705
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||||||||| ||||||||| |  ||||||||||||| || ||   |||||| ||||||||||||||||||||||| ||||||||||||| |      
T  22922839 cagagagtgagggttt-agaggaagagatagattctaccttggggattgttatgagtcccctatttatagaggtggagggctacagagccgttgtagtga 22922741  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||  ||||  |||||||||||||||||||||    
T  22922740 cacacctggctctagcggttacgaaatcgtgggaag 22922705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 41037785 - 41037712
Alignment:
Q  71 atttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||  ||||| |||||||||||||||||||||    
T  41037785 atttatagaggtggagggctgcggagccgttgtaatggcacacctggctctggcggttacgaaatcgtgggaag 41037712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 22922242 - 22922108
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||||||||| ||||||||| |  |||||||||||||  ||||   |||||| ||||||||||||||||||||||| ||||||||||||| |      
T  22922242 cagagagtgagggttt-agaggaagagatagattctaccttgggaactgttatgagtcccctatttatagaggtggagggctacagagccgttgtagtga 22922144  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||  |||||  |||||| |||||||||||||    
T  22922143 cacacctggctctggtggttacaaaatcgtgggaag 22922108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 19330052 - 19329991
Alignment:
Q  83 ggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||| ||||||| ||||||| |||||||   ||||| |||||||||||||||||||||    
T  19330052 ggagggctacagagccattgtaatggcacaccaagctctggcggttacgaaatcgtgggaag 19329991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 8244511 - 8244596
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagag 96  Q
    |||||||||||||||  |||||||| |  ||||||||||||  |||||   |||||| | |||||||||||||||||||||||||||    
T  8244511 agagagtgagggtttt-gaggaagagatagattctaccttgaggactgatgtgagtcccttatttatagaggtggagggctgcagag 8244596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 23927252 - 23927179
Alignment:
Q  40 attctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacac 113  Q
    |||||||||||| | |||||  ||| |||||||||||| ||||||  |  ||||||||||||||||| ||||||    
T  23927252 attctaccttggaggctgcagggagcctcctatttataaaggtgggtgaatgcagagccgttgtaatggcacac 23927179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 17282690 - 17282557
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  17282690 cagagagtgagggtttgagaggaggaaaggttctaccttggggactgcattgagtcccctatttatagaggtggagggctgcagagccgttgtaatggca 17282591  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||||||||||||||||||| ||||||||||    
T  17282590 caccttactctgacggttacgaattcgtgggaag 17282557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 25239694 - 25239827
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||    
T  25239694 cagagagtgagggtttgagagaaagaaagattctaccttggggactgcatttagtcccctatttatagaggtggagggctgcagagccgttgtaatggca 25239793  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||||||||||||||||||||| ||||||||    
T  25239794 caccttactctgacggttacgaaattgtgggaag 25239827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 13861313 - 13861446
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||| |||||||||||| |||    
T  13861313 cagagagtgagggtttgagaagaagaaagattctaccttggggactgcattgagttccctatttatagaggtggagggctgcaaagccgttgtaatggca 13861412  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||||||| || |||||||||||||||||||    
T  13861413 caccttactctaacagttacgaaatcgtgggaag 13861446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 3270546 - 3270679
Alignment:
Q  12 agagagtgagggttt-gagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    ||||||||||||||| ||| |  ||| |||| ||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  3270546 agagagtgagggtttagagggagagatagatcctaccttggggactgccgtgagtcccctatttatagaggtggagggctgcagagccgttgtaatggca 3270645  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||  |||||  ||||||||||||||||||||    
T  3270646 cacctggctctggtggttacgaaatcgtgggaag 3270679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 10985912 - 10985780
Alignment:
Q  12 agagagtgagggtttgagaggaagaa--agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    |||||||||||||||| ||||||||   |||||||||||||| ||||||  |||||| |||||||||||||||||| |||||||||||||||||||| ||    
T  10985912 agagagtgagggtttg-gaggaagaggtagattctaccttgg-gactgccgtgagtcccctatttatagaggtggatggctgcagagccgttgtaatggc 10985815  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||  ||||  |||||||||||||||||||||    
T  10985814 acacctggctctcgcggttacgaaatcgtgggaag 10985780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 21332743 - 21332611
Alignment:
Q  12 agagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcac 111  Q
    ||||||||||||||||||    ||| ||||||||||||||  ||||| ||||||| |||||||| |||||||||||||||||||||||||||| | ||||    
T  21332743 agagagtgagggtttgaggaagagatagattctaccttggaaactgctttgagtcccctatttacagaggtggagggctgcagagccgttgtagtggcac 21332644  T
Q  112 accttactctgacggttacgaaatcgtgggaag 144  Q
    ||||  ||||| || |||||||||| |||||||    
T  21332643 acctggctctggcgcttacgaaatcatgggaag 21332611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 12885280 - 12885413
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    |||| |||||||||| ||||||||| |  ||||||||||||| |||||   |||||| |||||||||| |||||||||||||||||||| ||||||| ||    
T  12885280 agagggtgagggttt-agaggaagagatagattctaccttggggactgttgtgagtcccctatttataaaggtggagggctgcagagccattgtaatggc 12885378  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||  ||||| |||||||||||||||||||||    
T  12885379 acacctggctctggcggttacgaaatcgtgggaag 12885413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 3268334 - 3268467
Alignment:
Q  12 agagagtgagggttt-gagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    ||||||||||||||| ||| |  ||| |||||||||||||| |||| |  |||||| ||||||||||||||||||||||||||||||| |||||||  ||    
T  3268334 agagagtgagggtttagagggagagatagattctaccttggagacttccgtgagtcccctatttatagaggtggagggctgcagagccattgtaatgaca 3268433  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||  ||||| |||||||| ||||||||||||    
T  3268434 cacctggctctggcggttacgtaatcgtgggaag 3268467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 142
Target Start/End: Complemental strand, 9901871 - 9901770
Alignment:
Q  41 ttctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgg 140  Q
    ||||||||||  ||||||   ||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  9901871 ttctaccttgaggactgctaagagtcccctatatatagaggtggagggttgcagagccgttgtaatggcacacctggctctgacggttacgaaatcgtgg 9901772  T
Q  141 ga 142  Q
    ||    
T  9901771 ga 9901770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 49402721 - 49402821
Alignment:
Q  40 attctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtg 139  Q
    ||||||| |||| ||||||  |||||| ||||| ||||||||||||||||||||||||||||||||| |||||||   ||||| ||||||||| ||||||    
T  49402721 attctactttggggactgctatgagtcccctatatatagaggtggagggctgcagagccgttgtaatggcacaccaggctctggcggttacgagatcgtg 49402820  T
Q  140 g 140  Q
    |    
T  49402821 g 49402821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 12217588 - 12217655
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaa 105  Q
    |||||||||||||| |||||   |||||| ||||||||||||||||||||||||||||||||||||||    
T  12217588 agattctaccttggggactgtcgtgagtcccctatttatagaggtggagggctgcagagccgttgtaa 12217655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 18284725 - 18284661
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttat 76  Q
    |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||||||    
T  18284725 cagagagtgagggttt-agaggaagagagattctaccttggggactgcattgagtcccctatttat 18284661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 26780988 - 26780882
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcg 137  Q
    |||||||||||||| |||||   ||| || |||||  | ||||||||||||||||||||||||||||||  ||||||  ||||||  |||||||||| ||    
T  26780988 agattctaccttggggactgttatgactcccctatacagagaggtggagggctgcagagccgttgtaatgacacaccagactctggtggttacgaaaacg 26780889  T
Q  138 tgggaag 144  Q
    |||||||    
T  26780888 tgggaag 26780882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 10422046 - 10422106
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctccta 71  Q
    ||||||||||||||||  |||||||||| |||||||||||| |||||||||||||| ||||    
T  10422046 cagagagtgagggtttttgaggaagaaatattctaccttggggactgcattgagtccccta 10422106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 8082047 - 8082173
Alignment:
Q  14 agagtgagggtttgagaggaagaa-agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcaca 112  Q
    ||||||||||||| |||| ||||  ||||||||| |||| ||||||   ||||| ||||| |||||||||||||| |||||||||| ||||||| |||||    
T  8082047 agagtgagggttt-agagaaagagtagattctacattggggactgctaagagtcccctatatatagaggtggaggactgcagagccattgtaatggcaca 8082145  T
Q  113 ccttactctgacggttacgaaatcgtgg 140  Q
    |||   ||  || |||||||||||||||    
T  8082146 cctgggtccaacagttacgaaatcgtgg 8082173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 6671285 - 6671319
Alignment:
Q  208 gagaacaataaacttatctgtggtgatttgatgtc 242  Q
    |||||||||||||||||||||||||||||||||||    
T  6671285 gagaacaataaacttatctgtggtgatttgatgtc 6671319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 28891910 - 28892009
Alignment:
Q  12 agagagtgagggtttgagaggaagaa-agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    ||||||||||| ||  |||||||||| |||||||||||||| ||||     ||||| ||||| ||||||||||||| |||||| |||||||||||| |||    
T  28891910 agagagtgaggttt--agaggaagaatagattctaccttggggactcttaagagtcccctatatatagaggtggagagctgcatagccgttgtaatggca 28892007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 34845630 - 34845524
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcg 137  Q
    |||||||||||||| ||||||   ||| | ||| | |||||||||||  |  ||||||| ||||||||| |||||| |   |||||||||||||||||||    
T  34845630 agattctaccttggggactgcgaggagccccctttatatagaggtgggtgaatgcagagtcgttgtaatggcacacatgtgtctgacggttacgaaatcg 34845531  T
Q  138 tgggaag 144  Q
    |||||||    
T  34845530 tgggaag 34845524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 45313209 - 45313279
Alignment:
Q  74 tatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||||| ||||| |||| | |||||||||| |||||||   ||||| |||||||||||||||||||||    
T  45313209 tatagaggtagagggttgcaaatccgttgtaatggcacaccaggctctggcggttacgaaatcgtgggaag 45313279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 6667613 - 6667647
Alignment:
Q  208 gagaacaataaacttatctgtggtgatttgatgtc 242  Q
    ||||||||||||||||| |||||||||||||||||    
T  6667613 gagaacaataaacttatatgtggtgatttgatgtc 6667647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 16396389 - 16396333
Alignment:
Q  88 gctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||||||||||||| | |||||||| |||||| || ||| |||||| |||||||    
T  16396389 gctgcagagccgttgtagtggcacacctgactctggcgattaggaaatcatgggaag 16396333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 25820716 - 25820849
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |||||||||||||||||| |||||||||||| |||    
T  25820716 cagagagtaagggtttgagaggaagaaagattctaccatggggactgcattgagtcccctatttttagaggtggagggctgcaaagccgttgtaatggca 25820815  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||||||||||||||||||||||||||||||    
T  25820816 caccttactctgacggttacgaaatcgtgggaag 25820849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 2085942 - 2085809
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||||| |  ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||    
T  2085942 agagagtgagggttt-agaggaagagatagattctaccttggggactgcattgagtcccctatttatagaggtggagggctgcagaaccgttgtaatggc 2085844  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||  ||||| |||||||||||||||||||||    
T  2085843 acacctggctctggcggttacgaaatcgtgggaag 2085809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 1788650 - 1788732
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgca 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1788650 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgca 1788732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 18040680 - 18040548
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||| ||||| ||||||||| |  ||||||||||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| ||    
T  18040680 agagagtgaaggttt-agaggaagagattgattctaccttggggactgc-ttgagtcccctatttatagaggtggagagctgcagagccgttgtaatggc 18040583  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||  |||||||||||||||||||||||||||    
T  18040582 acacctggctctgacggttacgaaatcgtgggaag 18040548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 10532960 - 10532860
Alignment:
Q  40 attctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtg 139  Q
    |||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  10532960 attctaccttggggactccattaagtcccctatttatagaggtggagggctgcagagccgttgtaatggcacacctgactctggcggttacgaaatcgtg 10532861  T
Q  140 g 140  Q
    |    
T  10532860 g 10532860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 32009213 - 32009080
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||||| |  |||| |||||||| || | | ||||||| |||||||||||||||||||||||| |||||||||||||| ||    
T  32009213 agagagtgagggttt-agaggaagagatagattttaccttggggagtactttgagtcccctatttatagaggtggagggctgtagagccgttgtaatggc 32009115  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||| |||||| |||||||||||||||||||||    
T  32009114 acacctgactctggcggttacgaaatcgtgggaag 32009080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 7454867 - 7454733
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||||||||| | ||||||| |  ||||||| ||||| ||||||  |||||| |||||||||||||||||| |||||||||||||||||||| |    
T  7454867 cagagagtgagggttt-acaggaagagatagattctaacttggggactgctatgagtcccctatttatagaggtggaaggctgcagagccgttgtaatgg 7454769  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||  ||||| |||||||||||||||||||||    
T  7454768 cacacctggctctggcggttacgaaatcgtgggaag 7454733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 18574181 - 18574084
Alignment:
Q  47 cttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||  ||||| |||||||||||||||||||||    
T  18574181 cttggggaatgctttgagtcccctatttatagaggtggagggctgcagagccgttgtaatggcacacctggctctggcggttacgaaatcgtgggaag 18574084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 41280982 - 41280876
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcg 137  Q
    |||||||||||||| |||||   |||||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||||||  |||||| ||||||    
T  41280982 agattctaccttggggactgttatgagtcccctatttatagaggtggaggactgcagagccgttgtaatggcacacctgactctgggggttacaaaatcg 41280883  T
Q  138 tgggaag 144  Q
    |||||||    
T  41280882 tgggaag 41280876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 7999649 - 7999781
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||||||||| ||||||||| |  ||||||||||||| ||||||  |||||||||| |||||||||||||||| ||||  ||||||||||||      
T  7999649 cagagagtgagggttt-agaggaagagatagattctaccttggggactgccgtgagtctcctgtttatagaggtggaggactgc--agccgttgtaatga 7999745  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||  ||||| |||||||||||||||||||||    
T  7999746 cacacctggctctggcggttacgaaatcgtgggaag 7999781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 24060557 - 24060691
Alignment:
Q  11 cagagagtgagggtttgagaggaag--aaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||| ||||||||||| ||||||||  | |||||||||||||| ||||||   ||||| | ||| |||||||||||||||||||||||||||||| || |    
T  24060557 cagatagtgagggttt-agaggaagcgatagattctaccttggagactgctaagagtcccttatatatagaggtggagggctgcagagccgttgtgatgg 24060655  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||   ||||| ||||||| ||||||| |||||    
T  24060656 cacaccaggctctggcggttacaaaatcgtaggaag 24060691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 33273704 - 33273604
Alignment:
Q  14 agagtgagggttt-gagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcaca 112  Q
    ||||||||||||| ||||   ||| |||||||||||||| |||| |  |||||| ||||||||||||||||||||| ||||||||||||||||| |||||    
T  33273704 agagtgagggtttagagaaagagatagattctaccttggggactcctatgagtcccctatttatagaggtggagggttgcagagccgttgtaatggcaca 33273605  T
Q  113 c 113  Q
    |    
T  33273604 c 33273604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 11709419 - 11709501
Alignment:
Q  62 gagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||| |||||||   ||||| |  ||||||||||||||||||    
T  11709419 gagtcccctatatatagaggtggagggttgcagagccgttgtaatggcacaccaggctctggcatttacgaaatcgtgggaag 11709501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 24033762 - 24033894
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatag---aggtggagggctgcagagccgttgtaat 106  Q
    ||||||||| ||||| ||||||||| |  |||||||| |||| ||||||  |||||| |||| |||||    |||||||||| |||||||||||||||||    
T  24033762 agagagtgaaggttt-agaggaagagatagattctacattggggactgctatgagtcccctagttataatataggtggagggttgcagagccgttgtaat 24033860  T
Q  107 agcacaccttactctgacggttacgaaatcgtgg 140  Q
     |||||| | ||| || |||||||||||||||||    
T  24033861 ggcacacttgactttggcggttacgaaatcgtgg 24033894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 1788791 - 1788827
Alignment:
Q  206 gggagaacaataaacttatctgtggtgatttgatgtc 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  1788791 gggagaacaataaacttatctgtggtgatttgatgtc 1788827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 15604526 - 15604593
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaa 105  Q
    |||||||||||||| | |||||  ||| |||||||||||||||||||  |  ||||||||||||||||    
T  15604526 agattctaccttggaggctgcaaggagcctcctatttatagaggtgggtgaatgcagagccgttgtaa 15604593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 15612877 - 15612944
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaa 105  Q
    |||||||||||||| | |||||  ||| |||||||||||||||||||  |  ||||||||||||||||    
T  15612877 agattctaccttggaggctgcaaggagcctcctatttatagaggtgggtgaatgcagagccgttgtaa 15612944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 22609631 - 22609564
Alignment:
Q  74 tatagaggtggagggctgcagagccgttgtaatag--cacaccttactctgacggttacgaaatcgtg 139  Q
    ||||||||||||||| ||||||| |||||| || |  |||||||  ||||| ||||||||||||||||    
T  22609631 tatagaggtggagggttgcagagtcgttgtgatggtacacacctggctctggcggttacgaaatcgtg 22609564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 24974086 - 24973953
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| |||    
T  24974086 cagagagtgagggttttagaggaagagagattctaccttggtgactgcattgagtcccctatttatagagttagagggctgcagagccgttgtaatggca 24973987  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||| ||||||||||||||||||||||||||||    
T  24973986 cacctaactctgacggttacgaaatcgtgggaag 24973953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 21817938 - 21817805
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||| |||||||||||||||| |||    
T  21817938 cagagagtgagggttttagaggaagaaagattctaccttggggactgcattgagtcccctatttataaaggtggatggccgcagagccgttgtaatggca 21817839  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||| ||||||||||||||||||||||||||||    
T  21817838 cacctaactctgacggttacgaaatcgtgggaag 21817805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 22186186 - 22186053
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| || |||| |||||||||||||||||| |||||||||||||||||||| |||    
T  22186186 cagagagtgagggtttgagaggaagaaagattctaccttggggactgctttaagtcccctatttatagaggtggatggctgcagagccgttgtaatggca 22186087  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||||| ||||||||| |||||||||||||    
T  22186086 caccttactcggacggttacaaaatcgtgggaag 22186053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 21815723 - 21815619
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||    
T  21815723 cagagagtaagggttttagaggaagaaagattctaccttggagactgcattgagtcccatatttatagaggtggagggctgcagagctgttgtaatggca 21815624  T
Q  111 cacct 115  Q
    |||||    
T  21815623 cacct 21815619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 8990962 - 8990828
Alignment:
Q  11 cagagagtgagggtttgagaggaagaa--agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||||||||| |||||||||   |||||||||| ||| ||||||| |||||| |||||||| ||||||||||||||| |||||||||||||| |    
T  8990962 cagagagtgagggttt-agaggaagagttagattctaccgtggggactgcagtgagtcccctatttacagaggtggagggctgtagagccgttgtaatgg 8990864  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||  ||||  |||||||||||||||||||||    
T  8990863 cacacctggctctagcggttacgaaatcgtgggaag 8990828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 19442310 - 19442177
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||||| |  ||||||||||||| ||||||  |||||| ||||||||||||||||||| |||||| ||||||||||||  |    
T  19442310 agagagtgagggttt-agaggaagagatagattctaccttggggactgctgtgagtcccctatttatagaggtggagtgctgcaaagccgttgtaatgac 19442212  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||| || |||||| |||||||||||||| ||||||    
T  19442211 acatctgactctggcggttacgaaatcgggggaag 19442177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 19967618 - 19967488
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||||| |  ||||||||||| | |||||| ||||||| ||||||||||||||||||||| |||| | ||||||||||  |    
T  19967618 agagagtgagggttt-agaggaagagatggattctaccttagggactgctttgagtcccctatttatagaggtggagggttgcataaccgttgtaatgac 19967520  T
Q  110 acaccttactctgacggttacgaaatcgtggg 141  Q
    ||||||  ||||| ||||||||||||||||||    
T  19967519 acacctggctctggcggttacgaaatcgtggg 19967488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 8995610 - 8995505
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcg 137  Q
    |||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||| | |  |||||||  ||||  ||||||||||||||    
T  8995610 agattctaccttggggaatgcagtgagtcccctatttatagaggtggagggctgcagagccgttg-attgacacacctagctctagcggttacgaaatcg 8995512  T
Q  138 tgggaag 144  Q
    |||||||    
T  8995511 tgggaag 8995505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 9858996 - 9859104
Alignment:
Q  40 attctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacac---ctt-actctgacggttacgaaat 135  Q
    |||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||  | ||||||   |||  ||||||||||||||||||    
T  9858996 attctaccttggggactgctatgagtcccctatttatagaggtggagggctgcagagccgttgtggttgcacacacacttggctctgacggttacgaaat 9859095  T
Q  136 cgtgggaag 144  Q
    |||||||||    
T  9859096 cgtgggaag 9859104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 38621830 - 38621932
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcg 137  Q
    |||||||||||||| ||||||| |||||| | ||| ||||||||||||||||||||||||||||||||| |||||  |  |||||  |||||||||||||    
T  38621830 agattctaccttggggactgcagtgagtcccttatatatagaggtggagggctgcagagccgttgtaatggcacatttggctctggtggttacgaaatcg 38621929  T
Q  138 tgg 140  Q
    |||    
T  38621930 tgg 38621932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 170769 - 170684
Alignment:
Q  20 agggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaa 105  Q
    ||||||||||||   || |||||||||||||| | ||||  |||| |||||||||||||||||||| |  ||||||||||||||||    
T  170769 agggtttgagagtgtgagagattctaccttggaggctgcgatgagcctcctatttatagaggtggatgaatgcagagccgttgtaa 170684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 14871 - 15004
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||| |||||||||||||||| |||    
T  14871 cagagagtgagggttttagaggaagaaagattctaccttggggactgcattgagtcccctatttataaaggtggatggccgcagagccgttgtaatggca 14970  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||| ||||||||||||||||||||||||||||    
T  14971 cacctaactctgacggttacgaaatcgtgggaag 15004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 17086 - 17190
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||    
T  17086 cagagagtaagggttttagaggaagaaagattctaccttggagactgcattgagtcccatatttatagaggtggagggctgcagagctgttgtaatggca 17185  T
Q  111 cacct 115  Q
    |||||    
T  17186 cacct 17190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 7549 - 7417
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||| |||    
T  7549 cagagggtgagggtttgagaggaagaaagattctaccttggggattgcattgagtcccctatttatagaggtggagggctgcaaagccgttgtaatggca 7450  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||||||||| ||||||||||||| |||||    
T  7449 caccttactctgac-gttacgaaatcgttggaag 7417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 11072 - 10939
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||| ||||||||| ||||||||||||||||| |||||| |||| |||||||||  ||||||||| ||||||||||||| |||||||||||||| |||    
T  11072 cagagaatgagggttttagaggaagaaagattctcccttggggactccattgagtccactatttataaaggtggagggctgtagagccgttgtaatggca 10973  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||| |||||||||||||||||||| |||||||    
T  10972 cacctaactctgacggttacgaaatcatgggaag 10939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 41266396 - 41266262
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||||| |  ||||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  41266396 agagagtgagggttttagaggaagagatagattctaccttggggactgctgtgagtcccctatttatagaggtggagggctgcagagccgttgtaatggc 41266297  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||  ||||| ||||||||| |||||| ||||    
T  41266296 acacctggctctggcggttacgatatcgtgagaag 41266262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 42534295 - 42534189
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcg 137  Q
    |||||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||  ||||| ||||||||||||||    
T  42534295 agattctaccttggggactgctatgagtcccctatttatagaggtggagggctgcagagccgttgtaatggcacatctggctctggcggttacgaaatcg 42534196  T
Q  138 tgggaag 144  Q
    |||||||    
T  42534195 tgggaag 42534189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 27347170 - 27347302
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||||| |||||  |||||||| |||||||||||||| ||||||||||| || ||||| |||||| |||||||||| || |||||||||||| |||    
T  27347170 cagagagtgatggtttt-gaggaagagagattctaccttggggactgcattgaatcccctatgtatagacgtggagggctacaaagccgttgtaatggca 27347268  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||| || ||||||||||||||||| |||||||    
T  27347269 cacctaacactgacggttacgaaatcatgggaag 27347302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 23929796 - 23929930
Alignment:
Q  11 cagagagtgagggtttgagaggaagaa--agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||||||||| |||||||||   ||||| |||||||| ||||||| |||||| ||||| || |||||||||||||||||||||||||||||| |    
T  23929796 cagagagtgagggttt-agaggaagagttagattttaccttggggactgcagtgagtcccctatataaagaggtggagggctgcagagccgttgtaatgg 23929894  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||  ||||| |||||||| ||||||||||||    
T  23929895 cacacctggctctggcggttacggaatcgtgggaag 23929930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 23756018 - 23755885
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||||| |  ||||||||||||| |||||   |||||| |||||||||||||||||| ||||| |||||||||||||| ||    
T  23756018 agagagtgagggttt-agaggaagagatagattctaccttggggactgttgtgagtcccctatttatagaggtggaaggctgtagagccgttgtaatggc 23755920  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||  ||||  |||||||||||||||||||||    
T  23755919 acacctggctctagcggttacgaaatcgtgggaag 23755885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 25134106 - 25134004
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcg 137  Q
    |||||||||||| | ||||||  |||||| ||||||||||||||||||||||||||||||||||||| | ||||||||  ||||| ||||||||||||||    
T  25134106 agattctaccttagggactgctatgagtcccctatttatagaggtggagggctgcagagccgttgtagtggcacacctggctctggcggttacgaaatcg 25134007  T
Q  138 tgg 140  Q
    |||    
T  25134006 tgg 25134004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 3770260 - 3770389
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| | ||||||| |  ||||||||||||| |||||   ||| || ||||||||||||||||||||||||||||||||||||||| ||    
T  3770260 agagagtgagggtttaa-aggaagagatagattctaccttggggactgttgtgaatcccctatttatagaggtggagggctgcagagccgttgtaatggc 3770358  T
Q  110 acaccttactctgacggttacgaaatcgtgg 140  Q
    ||||||  ||||| ||||||| |||||||||    
T  3770359 acacctggctctggcggttacaaaatcgtgg 3770389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 29568315 - 29568448
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||||| |  ||||||| ||||| |  |||  |||||| || |||||||||||||||||||| ||||||||||||||| |     
T  29568315 agagagtgagggttt-agaggaagacatagattctaacttggcggttgctatgagtccccaatttatagaggtggagggctacagagccgttgtaatggt 29568413  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||  ||||| |||||||||||||||||||||    
T  29568414 acacctggctctggcggttacgaaatcgtgggaag 29568448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 3105203 - 3105337
Alignment:
Q  11 cagagagtgagggtttgagaggaagaa--agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||||| ||| |||||||||   |||||||||||||| ||||||  |||||| | ||||||||||||||||||  || ||||||||||||||      
T  3105203 cagagagtgaggtttt-agaggaagagttagattctaccttggggactgctatgagtcccatatttatagaggtggaggattgtagagccgttgtaatga 3105301  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||| ||||| | ||||| ||||||||||||||    
T  3105302 cacacctaactctcatggttatgaaatcgtgggaag 3105337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 26155131 - 26155049
Alignment:
Q  62 gagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||| ||||||||  || ||  ||||||||||||||||||||    
T  26155131 gagtcccctatttatagaggtggagggctgcatagccgttataatggcacacctggctatggtggttacgaaatcgtgggaag 26155049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 19092753 - 19092854
Alignment:
Q  43 ctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtggga 142  Q
    ||||||||| ||||||  |||||| ||||| ||||||||||| |||||||||||||||||||||  ||||||  |||||  ||||| |||| | ||||||    
T  19092753 ctaccttggggactgctatgagtcccctatatatagaggtggggggctgcagagccgttgtaatgacacaccagactctcgcggtttcgaacttgtggga 19092852  T
Q  143 ag 144  Q
    ||    
T  19092853 ag 19092854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 26159233 - 26159154
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggct 90  Q
    ||||||||||||||| ||||||||| |  |||||||||||||  ||||| ||||||| |||||||||||||||||||||||    
T  26159233 agagagtgagggttt-agaggaagagatagattctaccttgggaactgctttgagtcccctatttatagaggtggagggct 26159154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 54770 - 54670
Alignment:
Q  44 taccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaa 143  Q
    |||||| | |||||||||||||| |||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  54770 tacctttgggactgcattgagtcccctatttatagaggtggagggctgcatagccgttgtaatggtacaccttactctgacggttacgaaatcatgggaa 54671  T
Q  144 g 144  Q
    |    
T  54670 g 54670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 47615 - 47482
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||||| |  ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  47615 agagagtgagggttt-agaggaagagatagattctaccttggggactgctttgagtcccctatttatagaggtggagggctgcagagccgttgtaatggc 47517  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||| |  ||||| ||||||| |||| ||||||||    
T  47516 acacttggctctggcggttacaaaattgtgggaag 47482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 391458 - 391592
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||||||||| ||||||||| |  ||||||||||||| ||||||  |||||| ||||||||||||||||||||| ||||||||||||||||| |    
T  391458 cagagagtgagggttt-agaggaagagatagattctaccttggggactgctatgagtcccctatttatagaggtggagggttgcagagccgttgtaatgg 391556  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||  ||||| ||||||||||||  |||||||    
T  391557 cacacctggctctggcggttacgaaattatgggaag 391592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 380763 - 380894
Alignment:
Q  13 gagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||||||||| ||||||||| |  |||| |||| ||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  380763 gagagtgagggttt-agaggaagagatagatt-taccatggggactgctatgagtcccctatttatagaggtggagggctgcagagccgttgtaatggca 380860  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||  |||||  ||||||||||| ||| ||||    
T  380861 cacctggctctggaggttacgaaattgtgagaag 380894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 16853183 - 16853075
Alignment:
Q  36 aaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaat 135  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| |   |||||||| ||||||||  ||||| ||||||||||||    
T  16853183 aaagattctcccttggggactgcattgagtcccctatttatagaggtggagggctgcaaatatgttgtaatggcacacctggctctggcggttacgaaat 16853084  T
Q  136 cgtgggaag 144  Q
    |||||||||    
T  16853083 cgtgggaag 16853075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 22915051 - 22915185
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||||||||| ||||||||| |  ||||||||||||| ||||||  |||||| |||||||||| |||||||| ||||||||||||||||||| |    
T  22915051 cagagagtgagggttt-agaggaagagatagattctaccttggggactgctatgagtcccctatttataaaggtggagagctgcagagccgttgtaatgg 22915149  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
     |||| |  ||| | |||||| ||||||||||||||    
T  22915150 tacacttggctccggcggttatgaaatcgtgggaag 22915185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 19790346 - 19790408
Alignment:
Q  82 tggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  19790346 tggagggctgcagagccgttgtaatggcacacctgactctgacggttacgaaatcgtgggaag 19790408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 19773385 - 19773462
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggag 86  Q
    ||||||||||||||||   ||||||| |  ||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  19773385 cagagagtgagggtttagaaggaagagatagattctaccttggggactgctgtgagtctcctatttatagaggtggag 19773462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 1998006 - 1998087
Alignment:
Q  12 agagagtgagggttt-gagaggaagaaagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgc 92  Q
    ||||||||||||||| ||||   ||| |||||||||||||| |||||| ||||||  ||||||||||||||||||| |||||    
T  1998006 agagagtgagggtttagagacagagacagattctaccttggggactgctttgagtaccctatttatagaggtggagagctgc 1998087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 16914764 - 16914837
Alignment:
Q  69 ctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtggga 142  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||  |   |||| |||||||||||||||||||    
T  16914764 ctatatatagaggtggagggctgcagagccattgtaatggcacagatcggtctggcggttacgaaatcgtggga 16914837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 22006518 - 22006587
Alignment:
Q  37 aagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaat 106  Q
    ||||||||||||||| ||||||   ||||| | ||| ||||||||||||||||||||||| |||||||||    
T  22006518 aagattctaccttggggactgctacgagtcccttatatatagaggtggagggctgcagagtcgttgtaat 22006587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 22014035 - 22014104
Alignment:
Q  37 aagattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaat 106  Q
    ||||||||||||||| ||||||   ||||| | ||| ||||||||||||||||||||||| |||||||||    
T  22014035 aagattctaccttggggactgctacgagtcccttatatatagaggtggagggctgcagagtcgttgtaat 22014104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 44635823 - 44635880
Alignment:
Q  87 ggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||||||||||||||| |||||| | | || | |||||||||||||||||||||    
T  44635823 ggctgcagagccgttgtaatggcacacgtgagtccgtcggttacgaaatcgtgggaag 44635880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 36639623 - 36639696
Alignment:
Q  40 attctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacac 113  Q
    |||||||||| | | ||||  |||| |||||||||||||||||||  |  ||||||||||||||||| ||||||    
T  36639623 attctaccttagaggctgcgatgaggctcctatttatagaggtgggtgaatgcagagccgttgtaatggcacac 36639696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 68700 - 68806
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcg 137  Q
    ||||||||||||||  |||||  |||||| |||||||||||||||||||||||||| ||||||||||||  |||||||| || || ||||||||||||||    
T  68700 agattctaccttgggcactgcggtgagtcccctatttatagaggtggagggctgcaaagccgttgtaatgacacaccttgctttggcggttacgaaatcg 68799  T
Q  138 tgggaag 144  Q
    |||||||    
T  68800 tgggaag 68806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 74872 - 74978
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcg 137  Q
    |||||||||||||| || |||  |||||| |||||||||||||||||||||||| |||||||||||||| ||||||||  ||||| | |||| |||||||    
T  74872 agattctaccttggggaatgcggtgagtcccctatttatagaggtggagggctgtagagccgttgtaatggcacacctggctctggcagttatgaaatcg 74971  T
Q  138 tgggaag 144  Q
    | |||||    
T  74972 tcggaag 74978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 4397 - 4265
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||||||||| ||||||||| |  ||||||  ||||| |||||   |||||| ||||||||||||||||||||||||||||||||||||| | |    
T  4397 cagagagtgagggttt-agaggaagagatagattctctcttggggactgatgtgagtcccctatttatagaggtggagggctgcagagccgttgtagtgg 4299  T
Q  109 cacaccttactctgacggttacgaaatcgtggga 142  Q
    |||||||  |||||  ||||||||||||||||||    
T  4298 cacacctggctctggtggttacgaaatcgtggga 4265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 1609 - 1741
Alignment:
Q  13 gagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagca 110  Q
    |||||||||||||| ||||||||| |  |||||||| |||| |||||   |||||| |||||||||||||||||| |||||||||||||||||||| |||    
T  1609 gagagtgagggttt-agaggaagagatagattctacattggggactgttgtgagtcccctatttatagaggtggatggctgcagagccgttgtaatggca 1707  T
Q  111 caccttactctgacggttacgaaatcgtgggaag 144  Q
     || |  ||||| |||||||||||||||||||||    
T  1708 tacttggctctggcggttacgaaatcgtgggaag 1741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 15364 - 15498
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||||||||| ||||||||| |  |||||||||  || |||||   |||||| ||||||||||||||||||||||||||||||||||| ||| |    
T  15364 cagagagtgagggttt-agaggaagagatagattctaccgcggggactgttatgagtcccctatttatagaggtggagggctgcagagccgttgcaatgg 15462  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||  ||| |||||| ||||||| |||||||||||||    
T  15463 catgcctgactctggcggttactaaatcgtgggaag 15498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 16487 - 16382
Alignment:
Q  40 attctaccttggtg-actgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgt 138  Q
    |||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| | ||||||  ||||| ||||||| |||||||    
T  16487 attctaccttgggggactgctttgagtcccctatttatagaggtggagggctgcagagccattgtaatggtacacctggctctggcggttacaaaatcgt 16388  T
Q  139 gggaag 144  Q
    ||||||    
T  16387 gggaag 16382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 253312 - 253446
Alignment:
Q  11 cagagagtgagggtttgagaggaagaa--agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    |||||||||| ||||| |||||||||   |||||||||||||| ||||| | |||||| ||||| |||| ||||||| ||||||| || ||||||||| |    
T  253312 cagagagtgacggttt-agaggaagagttagattctaccttggggactgtagtgagtcccctatatataaaggtggacggctgcaaagtcgttgtaatgg 253410  T
Q  109 cacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||||  ||||| |||||||||||||||||||||    
T  253411 cacacctggctctggcggttacgaaatcgtgggaag 253446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 242731 - 242806
Alignment:
Q  69 ctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||  ||||  |||||||| ||||||||||||    
T  242731 ctatatatagaggtggagggcggcagagccgttgtaatggcacacctggctcttgcggttacgtaatcgtgggaag 242806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 19150 - 19254
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||| ||| ||||||||| |  ||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||||||  ||    
T  19150 agagagtgaggattt-agaggaagagatagattctaccttggggactgcagtgagtcccctatttatagaggtggagggctgcagagccattgtaacggc 19248  T
Q  110 acacct 115  Q
    ||||||    
T  19249 acacct 19254  T

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Target: scaffold0280 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 1237 - 1107
Alignment:
Q  15 gagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcaca 112  Q
    |||||||||||| ||||||||| |  |||||||| |||| ||||||  |||||| ||||||||||||||||||||||| || |||||||||||| | |||    
T  1237 gagtgagggttt-agaggaagagatagattctacgttggagactgctgtgagtcccctatttatagaggtggagggctacatagccgttgtaatggaaca 1139  T
Q  113 ccttactctgacggttacgaaatcgtgggaag 144  Q
    |||  ||||  || ||||||||||||||||||    
T  1138 cctggctctagcgattacgaaatcgtgggaag 1107  T

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Target: scaffold0026 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 151490 - 151357
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| | ||||||| |  ||||||||||| | || |||  |||||| ||||||||||||||||||||||||||||||||||||| | |     
T  151490 agagagtgagggtttaa-aggaagagatagattctaccttagggaatgctgtgagtcccctatttatagaggtggagggctgcagagccgttgtagtgga 151392  T
Q  110 acaccttactctgacggttacgaaatcgtgggaag 144  Q
    | ||||  ||||  |||||||||||||||||||||    
T  151391 agacctggctctagcggttacgaaatcgtgggaag 151357  T

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Target: scaffold0989 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 1721 - 1617
Alignment:
Q  12 agagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagc 109  Q
    ||||||||||||||| ||||||||| |  ||||||||||||| |||||| ||||||  |||||||||||||||||| ||||| ||||| |||||||| ||    
T  1721 agagagtgagggttt-agaggaagagatagattctaccttggggactgctttgagtgccctatttatagaggtggacggctgtagagctgttgtaatggc 1623  T
Q  110 acacct 115  Q
    ||||||    
T  1622 acacct 1617  T

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Target: scaffold0150 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 30230 - 30124
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcg 137  Q
    |||||||||||| | ||||||  |||||| | ||||||||||||||||||||||||||||| ||||||  | ||||||  |||||  ||||||||||| |    
T  30230 agattctaccttagggactgctgtgagtcccgtatttatagaggtggagggctgcagagccattgtaacggaacacctggctctggtggttacgaaattg 30131  T
Q  138 tgggaag 144  Q
    |||||||    
T  30130 tgggaag 30124  T

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Target: scaffold0111 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 3002 - 2897
Alignment:
Q  38 agattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcg 137  Q
    |||||||||||| | |||||   |||||| ||||| ||||||||||||| |||||||||| |||||||| |||||||   ||||| ||||||||||||||    
T  3002 agattctaccttcgggactgttatgagtc-cctatatatagaggtggagagctgcagagctgttgtaatggcacaccaggctctggcggttacgaaatcg 2904  T
Q  138 tgggaag 144  Q
    |||||||    
T  2903 tgggaag 2897  T

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Target: scaffold0192 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 12373 - 12456
Alignment:
Q  61 tgagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    |||||| ||||| |||||||||| |||||||||||||||||||||| |||||||   ||||| ||||||| ||||| |||||||    
T  12373 tgagtcccctatatatagaggtgaagggctgcagagccgttgtaatggcacaccaggctctggcggttacaaaatcatgggaag 12456  T

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Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 37374 - 37292
Alignment:
Q  62 gagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||| ||||| |||||||||||||||||||||||||||||| || |||| ||   ||||| |||||| ||||||||||||||    
T  37374 gagtcccctatatatagaggtggagggctgcagagccgttgtgatggcacgccaggctctggcggttatgaaatcgtgggaag 37292  T

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Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 86563 - 86433
Alignment:
Q  11 cagagagtgagggtttgagaggaagaaa--gattctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaatag 108  Q
    ||||||||||| |||| |||||||||||  ||||||| ||| | ||||||  |||||| ||||| ||||||||||||||| |||| || ||||||||| |    
T  86563 cagagagtgagagttt-agaggaagaaatagattctatcttcgggactgctatgagtcccctatatatagaggtggagggttgcaaagtcgttgtaatgg 86465  T
Q  109 cacaccttactctgacggttacgaaatcgtgg 140  Q
    |||||    ||||| || ||||||||||||||    
T  86464 cacactaggctctggcgattacgaaatcgtgg 86433  T

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Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 20455 - 20389
Alignment:
Q  40 attctaccttggtgactgcattgagtctcctatttatagaggtggagggctgcagagccgttgtaat 106  Q
    |||||||||||| |||||    ||||| ||||||| |||||||||||||||||||||||||||||||    
T  20455 attctaccttggggactgttaagagtcccctatttttagaggtggagggctgcagagccgttgtaat 20389  T

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Target: scaffold0063 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 36928 - 36846
Alignment:
Q  62 gagtctcctatttatagaggtggagggctgcagagccgttgtaatagcacaccttactctgacggttacgaaatcgtgggaag 144  Q
    ||||| ||||| |||||||||||  ||||| |||||||||||||| |||||| |   || |||||||||||||| ||||||||    
T  36928 gagtcccctatatatagaggtgggtggctgtagagccgttgtaatggcacacgtgtgtccgacggttacgaaattgtgggaag 36846  T

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