View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12541_low_14 (Length: 240)

Name: NF12541_low_14
Description: NF12541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12541_low_14
NF12541_low_14
[»] chr3 (4 HSPs)
chr3 (5-219)||(7011572-7011786)
chr3 (1-171)||(51125377-51125547)
chr3 (1-171)||(52692461-52692631)
chr3 (69-188)||(16246797-16246916)
[»] chr1 (6 HSPs)
chr1 (5-219)||(4345908-4346122)
chr1 (1-205)||(35606248-35606452)
chr1 (1-205)||(46407407-46407611)
chr1 (1-205)||(35569867-35570071)
chr1 (89-171)||(50978933-50979015)
chr1 (124-164)||(50979027-50979067)
[»] chr4 (11 HSPs)
chr4 (5-219)||(22698652-22698866)
chr4 (5-219)||(22981664-22981878)
chr4 (5-219)||(22995251-22995465)
chr4 (86-219)||(28948413-28948546)
chr4 (86-219)||(22703057-22703190)
chr4 (86-219)||(22990927-22991060)
chr4 (1-205)||(56560427-56560631)
chr4 (1-205)||(16565458-16565662)
chr4 (1-171)||(24036208-24036378)
chr4 (67-168)||(15618829-15618930)
chr4 (116-178)||(52056980-52057042)
[»] chr8 (6 HSPs)
chr8 (5-219)||(19648112-19648327)
chr8 (1-171)||(193306-193476)
chr8 (1-171)||(720910-721080)
chr8 (1-171)||(882017-882187)
chr8 (15-171)||(30983217-30983373)
chr8 (89-205)||(44240129-44240245)
[»] chr2 (6 HSPs)
chr2 (5-215)||(23360928-23361139)
chr2 (1-205)||(5916905-5917109)
chr2 (1-205)||(13895918-13896122)
chr2 (1-205)||(36311516-36311720)
chr2 (89-205)||(14036623-14036739)
chr2 (1-171)||(14380026-14380196)
[»] chr5 (6 HSPs)
chr5 (31-219)||(22809929-22810117)
chr5 (1-205)||(22481434-22481638)
chr5 (1-205)||(33232376-33232580)
chr5 (89-205)||(7071992-7072108)
chr5 (15-162)||(16841753-16841900)
chr5 (132-205)||(27738523-27738596)
[»] scaffold0009 (1 HSPs)
scaffold0009 (86-219)||(200029-200162)
[»] chr6 (4 HSPs)
chr6 (1-166)||(17830768-17830933)
chr6 (1-205)||(16547375-16547579)
chr6 (1-205)||(21515663-21515867)
chr6 (1-171)||(30019139-30019309)
[»] chr7 (3 HSPs)
chr7 (1-166)||(37638622-37638787)
chr7 (1-166)||(10372715-10372880)
chr7 (69-178)||(12963290-12963399)
[»] scaffold0394 (1 HSPs)
scaffold0394 (1-160)||(6607-6766)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 7011572 - 7011786
Alignment:
Q  5 atggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattattatc 104  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7011572 atgggatatcttggtccatacagatgtgaatgttatcacctccctgattttcggtgttctcatgggtttgaaaataacaacgaggtattcaattattatc 7011671  T
Q  105 aatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacacaagt 204  Q
    | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  7011672 actcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgcctaaattcacaattaagatacaagt 7011771  T
Q  205 tgaagtcgttgttgc 219  Q
    |||||||||||||||    
T  7011772 tgaagtcgttgttgc 7011786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 51125547 - 51125377
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| | ||||| || ||||| ||| || ||||| | || |||| |||| | || || ||||| ||||||    
T  51125547 accaatagggtacattggtccatatagatgtgaacgatatcatcttcctgaatttaggcgttctaacggattcgcaaatcataatgaagtatttaattat 51125448  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacg 171  Q
    ||||| || || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  51125447 tatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaatcctacg 51125377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 52692461 - 52692631
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| | ||||| || ||||| ||| || ||||| | || |||| |||| | || || ||||| ||||||    
T  52692461 accaatagggtacattggtccatatagatgtgaacgatatcatcttcctgaatttaggcgttctaacggattcgcaaatcataatgaagtatttaattat 52692560  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacg 171  Q
    ||||| || || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  52692561 tatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaatcctacg 52692631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 188
Target Start/End: Complemental strand, 16246916 - 16246797
Alignment:
Q  69 ggttcgaaaataacaacgaggtattcaattattatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattct 168  Q
    ||||||||||| | || || ||||||||||  ||  ||||||| ||||| |||||||| ||||||||||||   | ||||||||||||||||||||||||    
T  16246916 ggttcgaaaatcataatgaagtattcaatttctacgaatcaagtttaagatgcacaattgaaagaacttttaaggcatggaagaatagatttgcaattct 16246817  T
Q  169 acgacgcatgactaaattca 188  Q
    ||| |||||| |||| ||||    
T  16246816 acgtcgcatgcctaagttca 16246797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 4345908 - 4346122
Alignment:
Q  5 atggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattattatc 104  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  4345908 atgggatatcttggtccatacagatgtgaacgttatcacctccctgattttcggcgttctcatgggtttgaaaataacaacgaggtattcaattattatc 4346007  T
Q  105 aatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacacaagt 204  Q
    | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4346008 actcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgcctaaattcacaattaagacacaagt 4346107  T
Q  205 tgaagtcgttgttgc 219  Q
    |||||||||||||||    
T  4346108 tgaagtcgttgttgc 4346122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 35606248 - 35606452
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  ||||||||| ||||  |||||| ||||| || ||||| ||| || ||||| | ||||| |||||| | ||| | ||||| ||||||    
T  35606248 accaatagggtacattggtccatgcagacatgaaagatatcatcttcctgaatttaggcgttctaacgggtttgaaaatcataacaaagtatttaattat 35606347  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacac 200  Q
    ||||| ||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||||| ||||  |||||| |||| || | | |||||||||    
T  35606348 tatcactcaagtttaaggtgcacaatagaaagaactgttggggtatggaagaacagatttgcaatcctacatcgcatgcctaactttaaatttaagacac 35606447  T
Q  201 aagtt 205  Q
    |||||    
T  35606448 aagtt 35606452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 46407407 - 46407611
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  ||||||||||||||  |||| | ||||| || ||||| ||| || ||||| | ||||| | |||| | || || ||||| ||||||    
T  46407407 accaatagggtacattggtccatacagacatgaacggtatcatcttcctgaatttaggcgttctaacgggtttgcaaatcataatgaagtatttaattat 46407506  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacac 200  Q
    ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||| |||| || | | || ||||||    
T  46407507 tatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaatcctacgtcgcatgcctaactttaaatttgagacac 46407606  T
Q  201 aagtt 205  Q
    |||||    
T  46407607 aagtt 46407611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 35570071 - 35569867
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| ||||||| || ||||| ||| |  ||||   ||||||||||||| | || || |||||||||||     
T  35570071 accaatagggtacattggtccatatagatgtgaacgttatcatcttcctgaatttagacgttcaagtgggttcgaaaatcataatgaagtattcaattac 35569972  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacac 200  Q
    ||||| ||||| ||||| |||||||| |||||||||||||| ||||||||||||| |||||||||||| ||  ||||| |||| |||| |  | ||||||    
T  35569971 tatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaataaatttgcaattctgcgtagcatgcctaagttcaaatatgagacac 35569872  T
Q  201 aagtt 205  Q
    |||||    
T  35569871 aagtt 35569867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 50979015 - 50978933
Alignment:
Q  89 gtattcaattattatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacg 171  Q
    ||||| ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  50979015 gtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaatcctacg 50978933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 50979067 - 50979027
Alignment:
Q  124 aatagaaagaacttttggtgtatggaagaatagatttgcaa 164  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  50979067 aatagaaagaacttttggggtatggaagaacagatttgcaa 50979027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 22698652 - 22698866
Alignment:
Q  5 atggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattattatc 104  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  22698652 atgggatatcttggtccatacagatgtgaacgttatcacctccctgattttcggcgttctcatgggtttgaaaataacaacgaggtattcaattattatc 22698751  T
Q  105 aatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacacaagt 204  Q
    | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22698752 actcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgcctaaattcacaattaagacacaagt 22698851  T
Q  205 tgaagtcgttgttgc 219  Q
    |||||| ||||||||    
T  22698852 tgaagttgttgttgc 22698866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 22981878 - 22981664
Alignment:
Q  5 atggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattattatc 104  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  22981878 atgggatatcttggtccatacagatgtgaacgttatcacctccctgattttcggcgttctcatgggtttgaaaataacaacgaggtattcaattattatc 22981779  T
Q  105 aatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacacaagt 204  Q
    | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22981778 actcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgcctaaattcacaattaagacacaagt 22981679  T
Q  205 tgaagtcgttgttgc 219  Q
    |||||| ||||||||    
T  22981678 tgaagttgttgttgc 22981664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 22995465 - 22995251
Alignment:
Q  5 atggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattattatc 104  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  22995465 atgggatatcttggtccatacagatgtgaacgttatcacctccctgattttcggcgttctcatgggtttgaaaataacaacgaggtattcaattattatc 22995366  T
Q  105 aatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacacaagt 204  Q
    | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22995365 actcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgcctaaattcacaattaagacacaagt 22995266  T
Q  205 tgaagtcgttgttgc 219  Q
    |||||| ||||||||    
T  22995265 tgaagttgttgttgc 22995251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 28948546 - 28948413
Alignment:
Q  86 gaggtattcaattattatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaat 185  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28948546 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgcctaaat 28948447  T
Q  186 tcacaattaagacacaagttgaagtcgttgttgc 219  Q
    |||||||||||||||| ||| |||| ||| ||||    
T  28948446 tcacaattaagacacaggttcaagtggttattgc 28948413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 22703190 - 22703057
Alignment:
Q  86 gaggtattcaattattatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaat 185  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22703190 gaggtattcaattattatcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgcctaaat 22703091  T
Q  186 tcacaattaagacacaagttgaagtcgttgttgc 219  Q
    ||||||||| |||||| ||| |||| ||| ||||    
T  22703090 tcacaattatgacacaggttcaagtggttattgc 22703057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 22990927 - 22991060
Alignment:
Q  86 gaggtattcaattattatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaat 185  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22990927 gaggtattcaattattatcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgcctaaat 22991026  T
Q  186 tcacaattaagacacaagttgaagtcgttgttgc 219  Q
    ||||||||| |||||| ||| |||| ||| ||||    
T  22991027 tcacaattatgacacaggttcaagtggttattgc 22991060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 56560427 - 56560631
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  ||||||||||||||  |||| | ||||| || ||||| ||| || ||||| | ||||| | |||| | || || ||||| ||||||    
T  56560427 accaatagggtacattggtccatacagacatgaacggtatcatcttcctgaatttaggcgttctaacgggtttgcaaatcataatgaagtatttaattat 56560526  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacac 200  Q
    ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||| |||| || | | || ||||||    
T  56560527 tatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaatcctacgtcgcatgcctaactttaaatttgagacac 56560626  T
Q  201 aagtt 205  Q
    |||||    
T  56560627 aagtt 56560631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 16565458 - 16565662
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| ||||||| || ||||| ||| |  ||||   ||||||||||||| | || || ||| |||||||     
T  16565458 accaatagggtacattggtccatatagatgtgaacgttatcatcttcctgaatttagacgttcaagtgggttcgaaaatcataatgaagtaatcaattac 16565557  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacac 200  Q
    ||||| ||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||  ||||| |||| |||| |  | ||||||    
T  16565558 tatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattctgcgtagcatgcctaagttcaaatatgagacac 16565657  T
Q  201 aagtt 205  Q
    |||||    
T  16565658 aagtt 16565662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 24036378 - 24036208
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| | ||||| || ||||| ||| || ||||| | || |||| |||| | || || ||||| ||||||    
T  24036378 accaatagggtacattggtccatatagatgtgaacgatatcatcttcctgaatttaggcgttctaacggattcgcaaatcataatgaagtatttaattat 24036279  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacg 171  Q
    ||||| || || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  24036278 tatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaatcctacg 24036208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 15618829 - 15618930
Alignment:
Q  67 tgggttcgaaaataacaacgaggtattcaattattatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 166  Q
    ||||||||||||| | || || ||||||||||| ||||| ||||| ||| | |||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  15618829 tgggttcgaaaatcataatgaagtattcaattactatcactcaagtttaggatgcacaattgaaaaaacttttggggtatggaagaatagatttgcaatt 15618928  T
Q  167 ct 168  Q
    ||    
T  15618929 ct 15618930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 52057042 - 52056980
Alignment:
Q  116 aggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatg 178  Q
    |||||||||||||||| ||||||| | ||||||||||| ||||||| ||| ||||| ||||||    
T  52057042 aggtgcacaatagaaataacttttagggtatggaagaacagatttgaaatcctacgtcgcatg 52056980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 19648112 - 19648327
Alignment:
Q  5 atggggtatcttggtccatacagatgtgaaagtt-atcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattattat 103  Q
    ||||| |||||||||||||||| ||||||| ||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  19648112 atgggatatcttggtccatacaaatgtgaacgtttatcacctccctgattttcggcgttctcatgggtttgaaaataacaacgaggtattcaattattat 19648211  T
Q  104 caatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacacaag 203  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19648212 cactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgcctaaattcacaattaagacacaag 19648311  T
Q  204 ttgaagtcgttgttgc 219  Q
    ||||||||||||||||    
T  19648312 ttgaagtcgttgttgc 19648327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 193306 - 193476
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| | ||||| || ||||| ||| || ||||| | || |||| |||| | || || ||||| ||||||    
T  193306 accaatagggtacattggtccatatagatgtgaacgatatcatcttcctgaatttaggcgttctaacggattcgcaaatcataatgaagtatttaattat 193405  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacg 171  Q
    ||||| || || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  193406 tatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaatcctacg 193476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 720910 - 721080
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| | ||||| || ||||| ||| || ||||| | || |||| |||| | || || ||||| ||||||    
T  720910 accaatagggtacattggtccatatagatgtgaacgatatcatcttcctgaatttaggcgttctaacggattcgcaaatcataatgaagtatttaattat 721009  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacg 171  Q
    ||||| || || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  721010 tatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaatcctacg 721080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 882017 - 882187
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| | ||||| || ||||| ||| || ||||| | || |||| |||| | || || ||||| ||||||    
T  882017 accaatagggtacattggtccatatagatgtgaacgatatcatcttcctgaatttaggcgttctaacggattcgcaaatcataatgaagtatttaattat 882116  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacg 171  Q
    ||||| || || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  882117 tatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaatcctacg 882187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 30983373 - 30983217
Alignment:
Q  15 ttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattattatcaatcaagctt 114  Q
    |||||||||| ||||||||| | ||||| || ||||| ||| || ||||| | || |||| |||| | || || ||||| ||||||||||| || || ||    
T  30983373 ttggtccatatagatgtgaacgatatcatcttcctgaatttaggcgttctaacggattcgcaaatcataatgaagtatttaattattatcactctagttt 30983274  T
Q  115 aaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacg 171  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  30983273 aaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaatcctacg 30983217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 44240129 - 44240245
Alignment:
Q  89 gtattcaattattatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattca 188  Q
    ||||| ||||||||||| ||||| ||||| | ||||||||||||||||||||| ||||||||||| | ||||||||| ||||| |||||| |||| || |    
T  44240129 gtatttaattattatcactcaagtttaagatacacaatagaaagaacttttggggtatggaagaacatatttgcaatcctacgtcgcatgcctaacttta 44240228  T
Q  189 caattaagacacaagtt 205  Q
     | || |||||||||||    
T  44240229 aatttgagacacaagtt 44240245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 5 - 215
Target Start/End: Complemental strand, 23361139 - 23360928
Alignment:
Q  5 atggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattattatc 104  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||  |||||||||||| |||||||| ||||||||||||||||||||||    
T  23361139 atggggtatcttggtccatacagatgtgaacgttatcacctccctgattttcggcattctcatgggtttgaaaataataacgaggtattcaattattatc 23361040  T
Q  105 aatcaagcttaaggtgcacaatagaaagaac-ttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacacaag 203  Q
    | ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23361039 actcaagtttaaggtgcacaatagaaagaactttttggtgtatgaaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacacaag 23360940  T
Q  204 ttgaagtcgttg 215  Q
    ||||||||||||    
T  23360939 ttgaagtcgttg 23360928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 5917109 - 5916905
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| ||||||| || ||||| ||| |  ||||   ||||||||||||| | || || |||||||||||     
T  5917109 accaatagggtacattggtccatatagatgtgaacgttatcatcttcctgaatttagacgttcaagtgggttcgaaaatcataatgaagtattcaattac 5917010  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacac 200  Q
    ||||| ||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||| |||| |||| |  | ||||||    
T  5917009 tatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattctacgtagcatgcctaagttcaaatatgagacac 5916910  T
Q  201 aagtt 205  Q
    |||||    
T  5916909 aagtt 5916905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 13895918 - 13896122
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  ||||||||||||||  |||| | ||||| || ||||| ||| || ||||| | ||||| | |||| | || || ||||| ||||||    
T  13895918 accaatagggtacattggtccatacagacatgaacgatatcatcttcctgaatttaggcgttctaacgggtttgcaaatcataatgaagtatttaattat 13896017  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacac 200  Q
    ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||| |||| || | | || ||||||    
T  13896018 tatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaatcctacgtcgcatgcctaactttaaatttgagacac 13896117  T
Q  201 aagtt 205  Q
    |||||    
T  13896118 aagtt 13896122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 36311516 - 36311720
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| ||||||| || ||||| ||| |  ||||   ||||||||||||| | || || |||||||||||     
T  36311516 accaatagggtacattggtccatatagatgtgaacgttatcatcttcctgaatttagacgttcaagtgggttcgaaaatcataatgaagtattcaattac 36311615  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacac 200  Q
    ||||| ||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||  ||||| |||| |||| |  | ||||||    
T  36311616 tatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattctgcgtagcatgcctaagttcaaatatgagacac 36311715  T
Q  201 aagtt 205  Q
    |||||    
T  36311716 aagtt 36311720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 14036623 - 14036739
Alignment:
Q  89 gtattcaattattatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattca 188  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||| |||| || |    
T  14036623 gtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaatcctacgtcgcatgcctaacttta 14036722  T
Q  189 caattaagacacaagtt 205  Q
     | || |||||||||||    
T  14036723 aatttgagacacaagtt 14036739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 14380026 - 14380196
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| | ||||| || ||||| ||| |  ||||| | || |||| |||| | || || ||||| ||||||    
T  14380026 accaatagggtacattggtccatatagatgtgaacgatatcatcttcctgaatttagacgttctaacggattcgcaaatcataatgaagtatttaattat 14380125  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacg 171  Q
    ||||| || || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  14380126 tatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaatcctacg 14380196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 31 - 219
Target Start/End: Original strand, 22809929 - 22810117
Alignment:
Q  31 tgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattattatcaatcaagcttaaggtgcacaatagaa 130  Q
    |||| |||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  22809929 tgaacgttatcacctccctgattttcggcgttctcatgggtttgaaaataacaacgaggtattcaattattatcactcaagtttaaggtgcacaatagaa 22810028  T
Q  131 agaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacacaagttgaagtcgttgttgc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22810029 agaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacacaagttgaagtcgttgttgc 22810117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 22481434 - 22481638
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| ||||||| || ||||| ||| |  ||||   ||||||||||||| | || || |||||||||||     
T  22481434 accaatagggtacattggtccatatagatgtgaacgttatcatcttcctgaatttagacgttcaagtgggttcgaaaatcataatgaagtattcaattac 22481533  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacac 200  Q
    ||||| ||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||  ||||| |||| |||| |  | ||||||    
T  22481534 tatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattctgcgtagcatgcctaagttcaaatatgagacac 22481633  T
Q  201 aagtt 205  Q
    |||||    
T  22481634 aagtt 22481638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 33232376 - 33232580
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  ||||||||||||||  |||| | ||||| || ||||| ||| || ||||| | ||||| | |||| | || || ||||| ||||||    
T  33232376 accaatagggtacattggtccatacagacatgaacggtatcatcttcctgaatttaggcgttctaacgggtttgcaaatcataatgaagtatttaattat 33232475  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacac 200  Q
    ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||| |||| || | | || ||||||    
T  33232476 tatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaatcctacgtcgcatgcctaactttaaatttgagacac 33232575  T
Q  201 aagtt 205  Q
    |||||    
T  33232576 aagtt 33232580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 7072108 - 7071992
Alignment:
Q  89 gtattcaattattatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattca 188  Q
    ||||| ||||||||||| ||||  ||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||| |||||| |||| || |    
T  7072108 gtatttaattattatcactcaaatttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaatcctacgtcgcatgcctaacttta 7072009  T
Q  189 caattaagacacaagtt 205  Q
     | || |||||||||||    
T  7072008 aatttgagacacaagtt 7071992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 16841753 - 16841900
Alignment:
Q  15 ttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctca-tgggttcgaaaataacaacgaggtattcaattattatcaatcaagct 113  Q
    ||||||| || ||||||||| |||||||||| ||||| ||| ||||| || | |||||| |||||| | || || ||||||||||| ||  | ||||| |    
T  16841753 ttggtccttatagatgtgaacgttatcaccttcctgattttaggtgt-ctaagtgggtttgaaaatcataatgaagtattcaattactacgactcaagtt 16841851  T
Q  114 taaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc 162  Q
    |||  |||||||| ||||||  |||||| ||||||||| ||||||||||    
T  16841852 taaaatgcacaattgaaagatattttggagtatggaagcatagatttgc 16841900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 27738596 - 27738523
Alignment:
Q  132 gaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacacaagtt 205  Q
    |||||||||| ||||||||||| ||||||||||| ||||| |||||| |||| || | | || |||||||||||    
T  27738596 gaacttttggggtatggaagaacagatttgcaatcctacgtcgcatgcctaactttaaatttgagacacaagtt 27738523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 200162 - 200029
Alignment:
Q  86 gaggtattcaattattatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaat 185  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  200162 gaggtattcaattattatcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgcctaaat 200063  T
Q  186 tcacaattaagacacaagttgaagtcgttgttgc 219  Q
    ||||||||| |||||| ||| |||| ||| ||||    
T  200062 tcacaattatgacacaggttcaagtggttattgc 200029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 17830933 - 17830768
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||| |||||||||| ||||||||| ||||||| || |||||  || || ||||   ||||||||||||||| ||||| |||||||||||     
T  17830933 accaatagggtatattggtccatatagatgtgaacgttatcatcttcctgaagttaggcgttcaagtgggttcgaaaataataacgaagtattcaattac 17830834  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 166  Q
    || || ||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  17830833 taccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 17830768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 16547375 - 16547579
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| ||||||| || ||||| ||| |  ||||   ||||||||||||| | || || |||||||||||     
T  16547375 accaatagggtacattggtccatatagatgtgaacgttatcatcttcctgaatttagacgttcaagtgggttcgaaaatcataatgaagtattcaattac 16547474  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacac 200  Q
    ||||| ||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||  ||||| |||| |||| |  | ||||||    
T  16547475 tatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattctgcgtagcatgcctaagttcaaatatgagacac 16547574  T
Q  201 aagtt 205  Q
    |||||    
T  16547575 aagtt 16547579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 21515867 - 21515663
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  ||||||||||||||  |||| | ||||| || ||||| ||| || ||||| | ||||| | |||| | || || ||||| ||||||    
T  21515867 accaatagggtacattggtccatacagacatgaacggtatcatcttcctgaatttaggcgttctaacgggtttgcaaatcataatgaagtatttaattat 21515768  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacgacgcatgactaaattcacaattaagacac 200  Q
    ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||| |||||| |||| || | | || ||||||    
T  21515767 tatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaatcctacgtcgcatgcctaactttaaatttgagacac 21515668  T
Q  201 aagtt 205  Q
    |||||    
T  21515667 aagtt 21515663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 30019139 - 30019309
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| | ||||| || ||||| ||| || ||||| | || |||| |||| | || || ||||| ||||||    
T  30019139 accaatagggtacattggtccatatagatgtgaacgatatcatcttcctgaatttaggcgttctaacggattcgcaaatcataatgaagtatttaattat 30019238  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattctacg 171  Q
    ||||| || || ||||||||||||||||||||||||||||| ||||||||||| | ||||||||| |||||    
T  30019239 tatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaatcctacg 30019309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 37638622 - 37638787
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| ||||||| || ||||| ||| |  ||||   ||||||||||||| | || || |||||||||||     
T  37638622 accaatagggtacattggtccatatagatgtgaacgttatcatcttcctgaatttagacgttcaagtgggttcgaaaatcataatgaagtattcaattac 37638721  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 166  Q
    ||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  37638722 tatcactcaagtttaagatgcacaattgaaagaacttttggtgtatggaagaatagatttgcaatt 37638787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 10372880 - 10372715
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| ||||||| || ||||| ||| || | ||   |||||| |||||||| || || |||||| ||||     
T  10372880 accaatagggtacattggtccatatagatgtgaacgttatcatcttcctgaatttaggcgctcaagtgggtttgaaaataataatgaagtattcgattac 10372781  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 166  Q
    || || ||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  10372780 taccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 10372715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 12963290 - 12963399
Alignment:
Q  69 ggttcgaaaataacaacgaggtattcaattattatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattct 168  Q
    ||||||||||| | ||||| ||||||||||| || || ||||| ||||  | |||||| |||||||||||||| ||||||||||||||||||||||||||    
T  12963290 ggttcgaaaatcataacgaagtattcaattactaccactcaagtttaaaattcacaattgaaagaacttttggggtatggaagaatagatttgcaattct 12963389  T
Q  169 acgacgcatg 178  Q
     || ||||||    
T  12963390 gcgtcgcatg 12963399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 6766 - 6607
Alignment:
Q  1 accaatggggtatcttggtccatacagatgtgaaagttatcacctccctgactttcggtgttctcatgggttcgaaaataacaacgaggtattcaattat 100  Q
    |||||| |||||  |||||||||| ||||||||| ||||||| || ||||| |||  |  |||   ||||||||||||||| ||||| |||||||||||     
T  6766 accaatagggtacattggtccatatagatgtgaacgttatcatcttcctgaatttaagcattcaagtgggttcgaaaataataacgaagtattcaattac 6667  T
Q  101 tatcaatcaagcttaaggtgcacaatagaaagaacttttggtgtatggaagaatagattt 160  Q
    || || ||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  6666 taccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagattt 6607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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