View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12541_low_15 (Length: 236)
Name: NF12541_low_15
Description: NF12541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12541_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 2018847 - 2019063
Alignment:
| Q |
1 |
cttggatctgtgatctatcctataaacaggagtccaagtgtcaannnnnnnggttctgctggcgagggaatgaaaaattatctttacactgattatctga |
100 |
Q |
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| T |
2018847 |
cttggatctgtgatctatcctataaacaggaatccaagtgtcaatttttttggttctgctggcgggggaatgaaaaattatctttacactgattatctga |
2018946 |
T |
|
| Q |
101 |
acatctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgaggga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2018947 |
acatctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgaggga |
2019046 |
T |
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| Q |
201 |
ttacttgaacttctgga |
217 |
Q |
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||||||||||||||||| |
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| T |
2019047 |
ttacttgaacttctgga |
2019063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 213
Target Start/End: Original strand, 1990012 - 1990129
Alignment:
| Q |
96 |
tctgaacatctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccg |
195 |
Q |
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||||||||||||||||| ||||| ||||| |||||||| |||||||||||| | |||||||||||||||||||||| | || |||| |||||||||| | |
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| T |
1990012 |
tctgaacatctctgtcacttgcactatctaaatttgaagtaattgcttttcctttgtagaatggacacgttaagaaaatatcatcctatttctggttctg |
1990111 |
T |
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| Q |
196 |
agggattacttgaacttc |
213 |
Q |
| |
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| T |
1990112 |
agggattacttgaacttc |
1990129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 2035769 - 2035879
Alignment:
| Q |
102 |
catctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggat |
201 |
Q |
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||||||||||| ||||| ||||| ||||||||||||||||||||| | |||||||||||||| ||||||| |||| |||| ||||||||||| ||||||| |
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| T |
2035769 |
catctctgtcacttgcactatct-aatttgaaataattgcttttcctttgtagaatggacacattaagaaaacatcttcccgtttctggttctgagggat |
2035867 |
T |
|
| Q |
202 |
tacttgaacttc |
213 |
Q |
| |
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| |||||||||| |
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| T |
2035868 |
tgcttgaacttc |
2035879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 96 - 213
Target Start/End: Original strand, 2021574 - 2021691
Alignment:
| Q |
96 |
tctgaacatctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccg |
195 |
Q |
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|||| |||| ||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| || | ||||||||||| ||| | |
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| T |
2021574 |
tctgtacatttctgtcacttgcattatctaaatttgaaataattgatttttctctgtagaatggacacgttaagaaaacgtcttcctgtttctagttatg |
2021673 |
T |
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| Q |
196 |
agggattacttgaacttc |
213 |
Q |
| |
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|||||||| ||||||||| |
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| T |
2021674 |
agggattaattgaacttc |
2021691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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