View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12541_low_2 (Length: 442)
Name: NF12541_low_2
Description: NF12541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12541_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 275
Target Start/End: Complemental strand, 4709509 - 4709249
Alignment:
| Q |
15 |
ccatctccacttcgatgagtaacgcatttgtctttcaagcaattgatgttgattatatatgtttgtccaattactactgcaagaaaatggcatatgccaa |
114 |
Q |
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| T |
4709509 |
ccatctccacttcgatgagtaacgcatttgtctttcaagcaattgatgttgattatatatgtttgtccaattactactgcaagaaaatggcatatgccaa |
4709410 |
T |
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| Q |
115 |
cggaggtttatagtgacggattttaaatcgtaggtatagaaaagctatacctatggagaaaagtattagtcgtaggtatagttaacccaaaaattaaaac |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4709409 |
cggaggtttatagtgacggattttaaatagtaggtatagaaaagctatacctatggagaaaagtattagtcgtaggtatagttaacccaaaaattaaaac |
4709310 |
T |
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| Q |
215 |
aatcaaatacattcgaagtagataaggtcacccagtgaaatgttaacaccgccaaaacaca |
275 |
Q |
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||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
4709309 |
aatcaaatacatttgaagtatataaggtcgcccagtgaaatgttaacaccgccaaaacaca |
4709249 |
T |
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