View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12541_low_3 (Length: 392)
Name: NF12541_low_3
Description: NF12541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12541_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 36602381 - 36602121
Alignment:
| Q |
1 |
acagctggctttctatctgagttaggagttattgctcatgttgatcatcctaatactgcaaagcttgttggatgttgtgtagagggagaaatgcatcttg |
100 |
Q |
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| T |
36602381 |
acagctggctttctatctgagttaggagttattgctcatgttgatcatcctaataccgcaaagcttgttggatgttgtgtagagggagaaatgcatcttg |
36602282 |
T |
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| Q |
101 |
tcttcgaattgtctacactgggaagtttaggatatgttcttcatggtttgtagatactttgaactctctcatgatgacaatcacttttgaacttattttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36602281 |
tcttcgaattgtctacactgggaagtttaggatacgttcttcatggtttgtagatactttgaactctctcatgatgacaatcacttttaaacttattttg |
36602182 |
T |
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| Q |
201 |
tttttatatcaaatggaatgaaactcaatactcgagggtttacaaccctcgcacacatatt |
261 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36602181 |
ttttcatatcaaatggaatcaaactcaatactcgagggtttacaaccctcgcacacatatt |
36602121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 36602086 - 36601968
Alignment:
| Q |
262 |
aacatgctttcaactttaaatgtacttatagcttattccctcatgatgtatttcaggttcagataaaaccaaattggattggagtaaaaggtataaagtt |
361 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36602086 |
aacatactttcaactttaaatgtacttatagcttattccctcatgatgtatttcaggttcagataaaaccaaattggattggagtaaaaggtataaagtt |
36601987 |
T |
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| Q |
362 |
gctcttggaattgctgatg |
380 |
Q |
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| T |
36601986 |
gctctcggaattgctgatg |
36601968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 47014089 - 47014181
Alignment:
| Q |
9 |
ctttctatctgagttaggagttattgctcatgttgatcatcctaatactgcaaagcttgttggatgttgtgtagagggagaaatgcatcttgt |
101 |
Q |
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||||||||||||| |||| ||||||||||| | | |||||||| ||||| | ||| |||||||| ||||||| ||||||||||| ||||| |
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| T |
47014089 |
ctttctatctgagctaggcattattgctcatctaaaccatcctaacactgccagacttattggatgtggtgtagaaggagaaatgcaccttgt |
47014181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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