View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12541_low_4 (Length: 322)
Name: NF12541_low_4
Description: NF12541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12541_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 32965461 - 32965710
Alignment:
| Q |
19 |
gttccaccaccccacatgagcactgtacaaaaagtcaggaccaaattcaaggaaacatttttccctgatgatcctatgcgacaattcaagggacaaccat |
118 |
Q |
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| T |
32965461 |
gttccaccaccccacatgagcactgtacaaaaagtcaggaccaaattcaaggaaacatttttccctgatgatcctatgcgacaattcaagggacaaccat |
32965560 |
T |
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| Q |
119 |
gtaacagaaaattaatccttggagctcaatannnnnnncctattcttcagtggttacctaattacaatttcaaactccttaaagctgaccttatatctgg |
218 |
Q |
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| T |
32965561 |
gtaacagaaaattaatccttggagctcaatatttttttcctattcttcagtggttacctaattacaatttcaaactccttaaagctgaccttatatctgg |
32965660 |
T |
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| Q |
219 |
cctcaccattgctagcttggccatccctcaggttaacttgtttaataatt |
268 |
Q |
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| T |
32965661 |
cctcaccattgctagcttggccatccctcaggttaacttgtttaataatt |
32965710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 252
Target Start/End: Original strand, 32954255 - 32954442
Alignment:
| Q |
65 |
tcaaggaaacatttttccctgatgatcctatgcgacaattcaagggacaaccatgtaacagaaaattaatccttggagctcaatannnnnnncctattct |
164 |
Q |
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| T |
32954255 |
tcaaggaaacttttttccctgatgatcctttacgccaattcaaaggacaaacacttcaaaaaagactaatcttaggagctaaatattttttccctattct |
32954354 |
T |
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| Q |
165 |
tcagtggttacctaattacaatttcaaactccttaaagctgaccttatatctggcctcaccattgctagcttggccatccctcaggtt |
252 |
Q |
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| T |
32954355 |
tcaatggggttctatttatagcttcaaactctttaaatctgaccttgtttctggtctcactattgctagcttagccatcccacaggtt |
32954442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 32965713 - 32965745
Alignment:
| Q |
290 |
tagcttgtttaatactcatcgtatttaattatt |
322 |
Q |
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| T |
32965713 |
tagcttttttaatactcatcgtatttaattatt |
32965745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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