View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12541_low_6 (Length: 290)
Name: NF12541_low_6
Description: NF12541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12541_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 51919364 - 51919636
Alignment:
| Q |
1 |
tatggtgggacaggctattctagaagccgcattttacaaaatgatcgagcataagaaatcattcttgagaatcaagatatttttatactatttgtgtttg |
100 |
Q |
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| T |
51919364 |
tatggtgggacaggctattctagaagccgcattttacaaaatgatcgagcataagaaatcattcttgagaatcaagatatttttatactatttgtggttg |
51919463 |
T |
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| Q |
101 |
acatgttttgtttcatagaataaaatgttgttgacgttctatgaagggttcaaatggtgatgcatattaatgttgtgtttcgtagatttatggatgttgt |
200 |
Q |
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| T |
51919464 |
acatattttgtttcatagaataaaatgttgttgacgttctgcgaagggttcaaatggtgatgcacattaacgttgtgtttcctagatttatggatgttgt |
51919563 |
T |
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| Q |
201 |
gtttaagagaactagtttggttatctgaaaaggattaacatcgcatcttgttatttgtttatcttccttttat |
273 |
Q |
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| T |
51919564 |
gtttaagagaactagtttggttatctgaaaagggttagcatcgcatcttgttacttgtttatcttccttttat |
51919636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 34536964 - 34536996
Alignment:
| Q |
70 |
aatcaagatatttttatactatttgtgtttgac |
102 |
Q |
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| T |
34536964 |
aatcaacatatttttatactatttgtgtttgac |
34536996 |
T |
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