View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12542_high_3 (Length: 516)
Name: NF12542_high_3
Description: NF12542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12542_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 16 - 500
Target Start/End: Complemental strand, 785382 - 784898
Alignment:
| Q |
16 |
cattatttgcattcccttcccctttgtgttgctttttacttatttaattagtgctataacttagttgattttgccaacacatactatctggaaccttcta |
115 |
Q |
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| T |
785382 |
cattatttgcattcccttcccctttgtgttgctttttacttatttaattagtgctataacttagttgattttgccaacacatactatctggaaccttcta |
785283 |
T |
|
| Q |
116 |
attttccaatacaaaaagaatgaaaaagccacggttcctttgaatttgaatgacaataacaaatcattaggagatcactgattcctttataattagtatg |
215 |
Q |
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| T |
785282 |
attttccaatacaaaaagaatgaaaaagccacggttcctttgaatttgaatgacaataacaaatcattaggagatcactgattcctttataattagtatg |
785183 |
T |
|
| Q |
216 |
cataaagatgcaatataaagttgtggttgacattggctaggaacaaggatcatgtaattaatttattcattagtgcaccaaatgatcaatatgttgctta |
315 |
Q |
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| T |
785182 |
cataaagatgcaatataaagttgtggttgacattggctaggaacaaggatcatgtaattaatttattcattagtgcaccaaatgatcaaaatgttggtta |
785083 |
T |
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| Q |
316 |
ttattttatgggaaatgctaatcaaatatagcaaacacaatatacaacaaaaagtgaagtattctctgagttaaataatttatgttcttcaattcatttg |
415 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
785082 |
ttattttatgggaaatgctaatcaagtatagcaaacacaatatacaacaaaaagtgaagtattctctgagttaaataatttatgttcttcaattcagttg |
784983 |
T |
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| Q |
416 |
ttcattcataaggtaaaggatgcattaataatgttttagaaatctgacatgagatcgagaagtgaaatatttatgttatggttca |
500 |
Q |
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| T |
784982 |
ttcattcataaggtaaaggatacattaataatgttttagaaatctgacatgagatcgagaagtgaaatatttatgttatggttca |
784898 |
T |
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