View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12542_low_1 (Length: 764)

Name: NF12542_low_1
Description: NF12542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12542_low_1
NF12542_low_1
[»] chr6 (22 HSPs)
chr6 (7-339)||(14606160-14606514)
chr6 (400-487)||(14606006-14606093)
chr6 (448-551)||(8848035-8848140)
chr6 (491-549)||(23094608-23094666)
chr6 (491-552)||(19382994-19383055)
chr6 (490-549)||(14603975-14604034)
chr6 (491-549)||(19214781-19214839)
chr6 (491-549)||(21393426-21393484)
chr6 (491-552)||(2666141-2666202)
chr6 (491-548)||(17724581-17724638)
chr6 (491-548)||(23160780-23160837)
chr6 (491-547)||(19002769-19002825)
chr6 (491-549)||(15907093-15907151)
chr6 (413-487)||(31872998-31873072)
chr6 (491-549)||(32616898-32616956)
chr6 (448-487)||(23097045-23097084)
chr6 (491-549)||(8909966-8910024)
chr6 (491-549)||(21683171-21683229)
chr6 (491-549)||(31877213-31877271)
chr6 (413-466)||(7463214-7463267)
chr6 (492-549)||(14603728-14603785)
chr6 (491-548)||(17102635-17102692)
[»] chr7 (7 HSPs)
chr7 (491-748)||(10206659-10206916)
chr7 (491-547)||(9456941-9456997)
chr7 (491-541)||(48644159-48644209)
chr7 (491-549)||(18535662-18535721)
chr7 (449-487)||(45623332-45623370)
chr7 (491-536)||(27258279-27258324)
chr7 (491-536)||(39703138-39703183)
[»] chr3 (15 HSPs)
chr3 (513-748)||(48119569-48119802)
chr3 (491-552)||(9767929-9767990)
chr3 (491-552)||(46124028-46124089)
chr3 (491-549)||(11028072-11028129)
chr3 (491-549)||(15212737-15212795)
chr3 (491-549)||(15251956-15252014)
chr3 (491-549)||(22155376-22155434)
chr3 (518-585)||(1136157-1136224)
chr3 (490-552)||(53157278-53157340)
chr3 (491-548)||(21972645-21972702)
chr3 (491-548)||(21995076-21995133)
chr3 (491-548)||(41935243-41935300)
chr3 (491-549)||(6079879-6079937)
chr3 (491-553)||(24552581-24552643)
chr3 (491-553)||(24558720-24558782)
[»] chr8 (10 HSPs)
chr8 (396-487)||(44970788-44970879)
chr8 (243-339)||(44970646-44970742)
chr8 (491-547)||(23120522-23120578)
chr8 (491-552)||(508262-508323)
chr8 (491-582)||(22216423-22216514)
chr8 (491-549)||(8223730-8223788)
chr8 (497-547)||(21349404-21349454)
chr8 (518-551)||(23126932-23126965)
chr8 (422-487)||(40388059-40388123)
chr8 (491-548)||(45537326-45537383)
[»] chr5 (12 HSPs)
chr5 (396-487)||(35332558-35332649)
chr5 (243-339)||(35332415-35332511)
chr5 (491-550)||(22362557-22362616)
chr5 (491-552)||(21112711-21112772)
chr5 (491-549)||(42883073-42883131)
chr5 (497-550)||(27032680-27032733)
chr5 (491-548)||(38925437-38925494)
chr5 (413-487)||(11350652-11350726)
chr5 (519-597)||(28256327-28256405)
chr5 (449-487)||(32723804-32723842)
chr5 (491-536)||(29391378-29391423)
chr5 (491-548)||(35328810-35328867)
[»] chr1 (10 HSPs)
chr1 (491-587)||(41476035-41476131)
chr1 (639-748)||(41475851-41475956)
chr1 (491-549)||(15723291-15723349)
chr1 (413-487)||(15847375-15847449)
chr1 (422-487)||(48278551-48278616)
chr1 (493-548)||(2248044-2248099)
chr1 (413-487)||(18509577-18509651)
chr1 (491-549)||(44201672-44201730)
chr1 (491-552)||(46123005-46123066)
chr1 (490-549)||(19193807-19193866)
[»] scaffold0553 (1 HSPs)
scaffold0553 (491-553)||(6549-6611)
[»] chr2 (7 HSPs)
chr2 (491-553)||(2707131-2707193)
chr2 (491-553)||(31898581-31898643)
chr2 (491-548)||(45073808-45073861)
chr2 (491-549)||(24863912-24863970)
chr2 (491-549)||(25417080-25417138)
chr2 (509-553)||(39907536-39907580)
chr2 (491-549)||(24079509-24079567)
[»] scaffold0072 (1 HSPs)
scaffold0072 (491-552)||(46284-46345)
[»] scaffold0337 (1 HSPs)
scaffold0337 (491-549)||(789-847)
[»] scaffold0281 (1 HSPs)
scaffold0281 (494-553)||(4583-4642)
[»] scaffold0077 (1 HSPs)
scaffold0077 (491-549)||(52538-52596)
[»] chr4 (6 HSPs)
chr4 (491-548)||(43593847-43593904)
chr4 (491-552)||(35577352-35577413)
chr4 (517-582)||(51033336-51033401)
chr4 (491-549)||(16612222-16612280)
chr4 (491-549)||(18811327-18811385)
chr4 (491-549)||(50377326-50377384)
[»] scaffold0164 (2 HSPs)
scaffold0164 (492-543)||(5207-5257)
scaffold0164 (448-487)||(33866-33905)
[»] scaffold0214 (2 HSPs)
scaffold0214 (449-487)||(11573-11611)
scaffold0214 (449-487)||(25873-25911)
[»] scaffold0179 (1 HSPs)
scaffold0179 (491-553)||(28438-28500)
[»] scaffold0039 (1 HSPs)
scaffold0039 (491-549)||(102232-102290)
[»] scaffold2142 (1 HSPs)
scaffold2142 (422-467)||(395-440)
[»] scaffold0086 (1 HSPs)
scaffold0086 (512-553)||(42469-42510)
[»] scaffold0061 (2 HSPs)
scaffold0061 (438-487)||(1634-1683)
scaffold0061 (438-487)||(7145-7194)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 7 - 339
Target Start/End: Complemental strand, 14606514 - 14606160
Alignment:
Q  7 aggcaagagacttcatgtgagagtaagctatgagataaagtcgaaaatagcaaatcttgactcgagcttaaattaataaagcaatgtattgatttcaaac 106  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14606514 aggcaagagaattcatgtgagagtaagctatgagataaagttgaaaatagcaaatcttgagtcgagcttaaattaataaagcaatgtattgatttcaaac 14606415  T
Q  107 atgtcaaggtg--------------------attgtcaaggaattttgataaatcaataataattttccaagattagtaatcaaatacgagaacaaa-aa 185  Q
    || ||| ||||                    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14606414 atttcatggtgtaaccagttttatagttagaattgtcaaggatttttgataaatcaataataattttccaagattagtaatcaaatacgagaacaaacaa 14606315  T
Q  186 taaaacttcag-aatacatagaaaactcattcattgataatttgaggtctgatcaatattgcggtttctctcaaactgaagttcttatcaatattgcgga 284  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14606314 taaaacttcaggaatacattgaaaactcattcattgataatttgaggtctgatcaatattgcggtttctctcaaactgaagttctgatcaatattgcgga 14606215  T
Q  285 agtttattggttatgtacaatatttttaaattaaattgtactgtacttttagcag 339  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14606214 agtttattggctatgtacaatatttttaaattaaattgtactgtacttttagcag 14606160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 400 - 487
Target Start/End: Complemental strand, 14606093 - 14606006
Alignment:
Q  400 catatgttgtaggttaaaatagaaactgtcaaggatattttaggcaataaaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    ||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14606093 catatgttgcaggttaaaataaaaattgtcaagggtattttaggcaataaaaataggctacagcaaaagcatgtattgcctttattaa 14606006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 448 - 551
Target Start/End: Original strand, 8848035 - 8848140
Alignment:
Q  448 aaaaataggctacaccaaaagcat-gtattgcctttattaa-agg-actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgc 544  Q
    ||||| ||||||||||||||| |  |||||||||||||||| ||| ||||||||||||| ||  |||||||| ||||||||||||||||||| |||||||    
T  8848035 aaaaaaaggctacaccaaaagaaaagtattgcctttattaataggtactagcgtccagagggc-actcccgtgcccgtctgtccgctttttctactgcgc 8848133  T
Q  545 taacgta 551  Q
    |||||||    
T  8848134 taacgta 8848140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 23094666 - 23094608
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  23094666 actagcgtccaaacggatactcccgttcccgtctgtccgctctttctactgcgctaacg 23094608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 491 - 552
Target Start/End: Complemental strand, 19383055 - 19382994
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 552  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||||    
T  19383055 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaacgtat 19382994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 490 - 549
Target Start/End: Complemental strand, 14604034 - 14603975
Alignment:
Q  490 gactagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    |||||||||||||||||  |||||||| ||||||||||| ||||||| ||||||||||||    
T  14604034 gactagcgtccagacgggcactcccgtacccgtctgtccactttttctactgcgctaacg 14603975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 19214781 - 19214839
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| || |||||||||    
T  19214781 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctaccgcgctaacg 19214839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 21393484 - 21393426
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| ||||||||||||    
T  21393484 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacg 21393426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 491 - 552
Target Start/End: Complemental strand, 2666202 - 2666141
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 552  Q
    |||||| |||||||||  |||||||| |||||||||||| |||||| |||||||||||||||    
T  2666202 actagcatccagacgggcactcccgtgcccgtctgtccgttttttctactgcgctaacgtat 2666141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 491 - 548
Target Start/End: Complemental strand, 17724638 - 17724581
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 548  Q
    ||||||||||||||||  |||||| | ||||||||||||||||||| |||||||||||    
T  17724638 actagcgtccagacgggcactcccatgcccgtctgtccgctttttctactgcgctaac 17724581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 491 - 548
Target Start/End: Complemental strand, 23160837 - 23160780
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 548  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| |||||||||||    
T  23160837 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaac 23160780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 547
Target Start/End: Complemental strand, 19002825 - 19002769
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaa 547  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| || |||||||    
T  19002825 actagcgtccagacgggcactcccgtacccgtctgtccgctttttctaccgcgctaa 19002769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 15907151 - 15907093
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||| ||||||  |||||||| |||||||||||||| |||| ||||||||||||    
T  15907151 actagcgtctagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacg 15907093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 487
Target Start/End: Complemental strand, 31873072 - 31872998
Alignment:
Q  413 ttaaaatagaaactgtcaaggatattttaggcaataaaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    |||||| | ||| ||| |||| ||||||||||| ||||||||||||||||||||  ||||| || ||||||||||    
T  31873072 ttaaaacaaaaattgtgaagggtattttaggcagtaaaaataggctacaccaaatccatgtttttcctttattaa 31872998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 32616898 - 32616956
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    |||| |||||||||||  |||||||| ||||||||||||||||||| ||| ||||||||    
T  32616898 actaacgtccagacgggcactcccgtgcccgtctgtccgctttttctactacgctaacg 32616956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 487
Target Start/End: Original strand, 23097045 - 23097084
Alignment:
Q  448 aaaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  23097045 aaaaataggctacaccaaaatcaagtattgcctttattaa 23097084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 8910024 - 8909966
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||||||  |||| ||| |||||||| |||||||||| ||||||| ||||    
T  8910024 actagcgtccagacgggcactctcgtgcccgtctgcccgctttttctactgcgcaaacg 8909966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 21683171 - 21683229
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    |||||||| |||||||  |||||||| |||||||||||||| |||| | ||||||||||    
T  21683171 actagcgttcagacgggcactcccgtgcccgtctgtccgctctttctattgcgctaacg 21683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 31877271 - 31877213
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    |||||||||||||| |  ||||||||  ||||||||||||| |||| ||||||||||||    
T  31877271 actagcgtccagaccggcactcccgtatccgtctgtccgctctttctactgcgctaacg 31877213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 466
Target Start/End: Original strand, 7463214 - 7463267
Alignment:
Q  413 ttaaaatagaaactgtcaaggatattttaggcaataaaaataggctacaccaaa 466  Q
    |||||| | ||| ||| |||| ||||||||||| ||||||||||||||||||||    
T  7463214 ttaaaacaaaaattgtgaagggtattttaggcagtaaaaataggctacaccaaa 7463267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 492 - 549
Target Start/End: Original strand, 14603728 - 14603785
Alignment:
Q  492 ctagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    |||||||| ||||||  ||||| || ||||||||||||||||||| ||||| ||||||    
T  14603728 ctagcgtcaagacggccactccggtgcccgtctgtccgctttttctactgcactaacg 14603785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 548
Target Start/End: Complemental strand, 17102692 - 17102635
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 548  Q
    ||||||||||||||||  |||||| | ||| |||||||||| |||| |||||||||||    
T  17102692 actagcgtccagacgggcactcccatgcccatctgtccgctctttctactgcgctaac 17102635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 491 - 748
Target Start/End: Original strand, 10206659 - 10206916
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataagtttgatt 590  Q
    |||||||||||||| |  ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10206659 actagcgtccagaccggcacttccgtgcccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataagtttgatt 10206758  T
Q  591 tgaatttaactatttacaaattacacaattgatagggatnnnnnnnnntgataaactaaaagatgtaaatatatgctacgtgtttaggttattagccaaa 690  Q
    |||||||||||||||||||||||||||||||||||| ||         ||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  10206759 tgaatttaactatttacaaattacacaattgataggaataaaaaaaaatgataaactaaaagatgtaaatatatgttaagtgtttaggttattagccaaa 10206858  T
Q  691 aacttgttggtacaacatccaaaataaactcgatcgtttgttcaaattatgaacataa 748  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  10206859 aacttgttcgtacaacatccaaaataaactcgatcgtttgtacaaattatgtacataa 10206916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 547
Target Start/End: Original strand, 9456941 - 9456997
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaa 547  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||||| | ||||||||    
T  9456941 actagcgtctagacggacactcccgtacccgtctgtccgctttttctattgcgctaa 9456997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 541
Target Start/End: Complemental strand, 48644209 - 48644159
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactg 541  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||| ||||    
T  48644209 actagcgtccagacggacactctcgtgcccgtctgtccgctttttctactg 48644159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 18535662 - 18535721
Alignment:
Q  491 actagcgtccagacggatactcccgttcccg-tctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||||||  |||||||| |||| |||||||||| |||| ||||||||||||    
T  18535662 actagcgtccagacgggcactcccgtgcccggtctgtccgctctttctactgcgctaacg 18535721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 449 - 487
Target Start/End: Complemental strand, 45623370 - 45623332
Alignment:
Q  449 aaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  45623370 aaaataggctacaccaaaagaaagtattgcctttattaa 45623332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 536
Target Start/End: Original strand, 27258279 - 27258324
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttc 536  Q
    |||||| |||||||||| |||| ||| |||||||||||||||||||    
T  27258279 actagcatccagacggacactctcgtgcccgtctgtccgctttttc 27258324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 536
Target Start/End: Complemental strand, 39703183 - 39703138
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttc 536  Q
    ||||||||||||||||  |||||||| |||||||||||||| ||||    
T  39703183 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttc 39703138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 513 - 748
Target Start/End: Complemental strand, 48119802 - 48119569
Alignment:
Q  513 ccgttcccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataagtttgatttgaatttaactatttacaaatt 612  Q
    |||| ||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||| |||||| ||| |||||| ||||||||||| | |||    
T  48119802 ccgtgcccgtctgtccgctttttctattgcgctaatgtatgcgttgatttgattatttttctttgtataagattggtttgaagttaactatttatagatt 48119703  T
Q  613 acacaattgatagggatnnnnnnnnn-tgataaactaaaagatgtaaatatatgctacgtgtttaggttattagccaaaaacttgttggtacaacatcca 711  Q
    |||||||||||||||||          ||||||||||||||||||||||||||| |  ||||||||||||   |||||||||||||||||||||||||||    
T  48119702 acacaattgatagggataaaaaaaaaatgataaactaaaagatgtaaatatatgtttagtgtttaggtta---gccaaaaacttgttggtacaacatcca 48119606  T
Q  712 aaataaactcgatcgtttgttcaaattatgaacataa 748  Q
    |||||||||||||||||||| |||||||| |||||||    
T  48119605 aaataaactcgatcgtttgtacaaattatcaacataa 48119569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 491 - 552
Target Start/End: Complemental strand, 9767990 - 9767929
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 552  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| |||||||||||||||    
T  9767990 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacgtat 9767929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 491 - 552
Target Start/End: Original strand, 46124028 - 46124089
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 552  Q
    |||||||| |||||||  |||||||| ||||||||||||||||||| |||||||||||||||    
T  46124028 actagcgttcagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaacgtat 46124089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 11028072 - 11028129
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| ||||||||||||    
T  11028072 actagcgtccagacggc-actcccgtgcccgtctgtccgctttttctactgcgctaacg 11028129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 15212737 - 15212795
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||| ||  |||||||| ||||||||||||||||||| ||||||||||||    
T  15212737 actagcgtccagatgggcactcccgtgcccgtctgtccgctttttctactgcgctaacg 15212795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 15251956 - 15252014
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||| ||  |||||||| ||||||||||||||||||| ||||||||||||    
T  15251956 actagcgtccagatgggcactcccgtgcccgtctgtccgctttttctactgcgctaacg 15252014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 22155376 - 22155434
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||||||| |||||||| |||||||||||| |||||| ||| ||||||||    
T  22155376 actagcgtccagacggacactcccgtgcccgtctgtccgttttttctactacgctaacg 22155434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 518 - 585
Target Start/End: Original strand, 1136157 - 1136224
Alignment:
Q  518 cccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataagtt 585  Q
    |||||||||||| |||||| ||||||||||||||||| || | || ||||| ||||||| ||||||||    
T  1136157 cccgtctgtccgttttttctactgcgctaacgtatgcatatacttaattatgtttctttgtataagtt 1136224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 490 - 552
Target Start/End: Original strand, 53157278 - 53157340
Alignment:
Q  490 gactagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 552  Q
    |||||||||||||||||  |||| ||| |||||||||||||| |||| |||||||||| ||||    
T  53157278 gactagcgtccagacgggcactctcgtgcccgtctgtccgctctttctactgcgctaatgtat 53157340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 548
Target Start/End: Original strand, 21972645 - 21972702
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 548  Q
    ||||||||||||||||  |||||||| ||||| ||||||||||||| ||| |||||||    
T  21972645 actagcgtccagacgggcactcccgtgcccgtttgtccgctttttctactacgctaac 21972702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 548
Target Start/End: Original strand, 21995076 - 21995133
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 548  Q
    ||||||||||||||||  |||||||| ||||| ||||||||||||| ||| |||||||    
T  21995076 actagcgtccagacgggcactcccgtgcccgtttgtccgctttttctactacgctaac 21995133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 548
Target Start/End: Complemental strand, 41935300 - 41935243
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 548  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| |||||| ||||    
T  41935300 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgttaac 41935243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 6079937 - 6079879
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    |||||||| ||||| |  ||| |||| ||||||||||||||||||| ||||||||||||    
T  6079937 actagcgttcagaccggcacttccgtgcccgtctgtccgctttttctactgcgctaacg 6079879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 553
Target Start/End: Original strand, 24552581 - 24552643
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatg 553  Q
    ||||||||||||||||| ||||  ||  ||||||||| |||||||| |||||||||| |||||    
T  24552581 actagcgtccagacggacactcatgtgtccgtctgtctgctttttctactgcgctaaagtatg 24552643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 553
Target Start/End: Original strand, 24558720 - 24558782
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatg 553  Q
    ||||||||||||||||| ||||  ||  ||||||||| |||||||| |||||||||| |||||    
T  24558720 actagcgtccagacggacactcttgtgtccgtctgtctgctttttctactgcgctaaagtatg 24558782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 396 - 487
Target Start/End: Original strand, 44970788 - 44970879
Alignment:
Q  396 cttgcatatgttgtaggttaaaatagaaactgtcaaggatattttaggcaataaaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44970788 cttgcatatgttgtaggttaaaataaaaactgtcaagggtattttaggcaataaaaataggctacaccaaaagcatgtattgcctttattaa 44970879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 243 - 339
Target Start/End: Original strand, 44970646 - 44970742
Alignment:
Q  243 ttgcggtttctctcaaactgaagttcttatcaatattgcggaagtttattggttatgtacaatatttttaaattaaattgtactgtacttttagcag 339  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||||||    
T  44970646 ttgcagtttctctcaaactgaagttctgatcaatattgcggaagtttattggctatgtaaaatattttttaattaaattgtattgtacttttagcag 44970742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 491 - 547
Target Start/End: Original strand, 23120522 - 23120578
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaa 547  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||    
T  23120522 actagcgtccagacggacactcccgtgcccatctgtccgctttttctactgcgctaa 23120578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 552
Target Start/End: Original strand, 508262 - 508323
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 552  Q
    ||||||||||||||||  |||| ||| ||||||||||||| ||||  |||||||||||||||    
T  508262 actagcgtccagacgggcactctcgtgcccgtctgtccgcattttttactgcgctaacgtat 508323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 582
Target Start/End: Original strand, 22216423 - 22216514
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataa 582  Q
    ||||||||||||||||  ||||||||  | ||||||||| |||||| | ||||||||||||||  |  |||||||||| ||| ||| |||||    
T  22216423 actagcgtccagacgggcactcccgtatctgtctgtccgttttttctattgcgctaacgtatgtatgtatttgattatatttttttgtataa 22216514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 8223730 - 8223788
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||||||  |||||||| ||| |||||||||| |||| ||||| ||||||    
T  8223730 actagcgtccagacgggcactcccgtgcccttctgtccgctctttctactgcactaacg 8223788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 21349404 - 21349454
Alignment:
Q  497 gtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaa 547  Q
    ||||||||| | |||||||| |||||||||||||| |||| ||||||||||    
T  21349404 gtccagacgtacactcccgtgcccgtctgtccgctctttctactgcgctaa 21349454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 551
Target Start/End: Complemental strand, 23126965 - 23126932
Alignment:
Q  518 cccgtctgtccgctttttccactgcgctaacgta 551  Q
    ||||||||||||||||||| ||||||||||||||    
T  23126965 cccgtctgtccgctttttctactgcgctaacgta 23126932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 487
Target Start/End: Complemental strand, 40388123 - 40388059
Alignment:
Q  422 aaactgtcaaggatattttaggcaataaaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    |||||||||||| ||||||||| | |||||||| |||||||| |||  | ||||||||||||||||    
T  40388123 aaactgtcaagg-tattttaggaagtaaaaataagctacacctaaactaagtattgcctttattaa 40388059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 548
Target Start/End: Complemental strand, 45537383 - 45537326
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 548  Q
    ||||||||||||||||  ||||| || ||||||||| ||||||||| || ||||||||    
T  45537383 actagcgtccagacgggcactcctgtgcccgtctgttcgctttttctaccgcgctaac 45537326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 396 - 487
Target Start/End: Original strand, 35332558 - 35332649
Alignment:
Q  396 cttgcatatgttgtaggttaaaatagaaactgtcaaggatattttaggcaataaaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35332558 cttgcatatgttgtaggttaaaataaaaactgtcaagggtattttaggcaataaaaataggctacactaaaagcatgtattgcctttattaa 35332649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 243 - 339
Target Start/End: Original strand, 35332415 - 35332511
Alignment:
Q  243 ttgcggtttctctcaaactgaagttcttatcaatattgcggaagtttattggttatgtacaatatttttaaattaaattgtactgtacttttagcag 339  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  35332415 ttgcagtttctctcaaactgaagttctgatcaatattgcggaagtttattggctatgtacaatattttttaattaaattgtattgtacttttagcag 35332511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 491 - 550
Target Start/End: Original strand, 22362557 - 22362616
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgt 550  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||    
T  22362557 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaacgt 22362616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 491 - 552
Target Start/End: Original strand, 21112711 - 21112772
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 552  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| |||||| ||||||||    
T  21112711 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgataacgtat 21112772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 42883131 - 42883073
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||  ||||||||||||    
T  42883131 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttttactgcgctaacg 42883073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 550
Target Start/End: Complemental strand, 27032733 - 27032680
Alignment:
Q  497 gtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgt 550  Q
    ||||||||||  |||||||| |||||||||||||| |||| |||||||||||||    
T  27032733 gtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacgt 27032680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 548
Target Start/End: Original strand, 38925437 - 38925494
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 548  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| ||| |||||||    
T  38925437 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactacgctaac 38925494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 413 - 487
Target Start/End: Original strand, 11350652 - 11350726
Alignment:
Q  413 ttaaaatagaaactgtcaaggatattttaggcaataaaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    |||||| | ||| ||| |||| ||||||||||| ||||||||||||||| ||||  ||||| ||||| |||||||    
T  11350652 ttaaaacaaaaattgtgaagggtattttaggcagtaaaaataggctacatcaaattcatgttttgccattattaa 11350726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 519 - 597
Target Start/End: Original strand, 28256327 - 28256405
Alignment:
Q  519 ccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataagtttgatttgaattt 597  Q
    ||||||||||||| |||| |||||||||||| ||| |   |||| ||||||||| ||| ||||| |||||||| |||||    
T  28256327 ccgtctgtccgctctttctactgcgctaacgcatgtgattattttattatttttgtttgtataattttgatttaaattt 28256405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 449 - 487
Target Start/End: Complemental strand, 32723842 - 32723804
Alignment:
Q  449 aaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  32723842 aaaatatgctacaccaaaagcatgtattgtctttattaa 32723804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 536
Target Start/End: Complemental strand, 29391423 - 29391378
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttc 536  Q
    |||| |||||||||||| |||||||| ||||| |||||||||||||    
T  29391423 actatcgtccagacggacactcccgtgcccgtttgtccgctttttc 29391378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 548
Target Start/End: Original strand, 35328810 - 35328867
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 548  Q
    ||||||||||||||||  | || ||| |||||||||||||| |||| |||||||||||    
T  35328810 actagcgtccagacgggcattcacgtgcccgtctgtccgctctttctactgcgctaac 35328867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 491 - 587
Target Start/End: Complemental strand, 41476131 - 41476035
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataagtttg 587  Q
    |||||||| |||||||| ||||||||  || ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| | ||||||||||    
T  41476131 actagcgttcagacggacactcccgtgtccatctgtccgctttttctactgcactaacgtatgcgttgatttgattatttttctatttataagtttg 41476035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 639 - 748
Target Start/End: Complemental strand, 41475956 - 41475851
Alignment:
Q  639 tgataaactaaaagatgtaaatatatgctacgtgtttaggttattagccaaaaacttgttggtacaacatccaaaataaactcgatcgtttgttcaaatt 738  Q
    ||||||||||||| ||||||||||||  |   ||||||||   ||||||||||| |||||| | ||||||||||||||||||||||||||||| ||| ||    
T  41475956 tgataaactaaaatatgtaaatatatttttattgtttagg---ttagccaaaaa-ttgttgttgcaacatccaaaataaactcgatcgtttgtacaagtt 41475861  T
Q  739 atgaacataa 748  Q
    || |||||||    
T  41475860 atcaacataa 41475851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 15723349 - 15723291
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| ||||||||||||    
T  15723349 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacg 15723291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 413 - 487
Target Start/End: Original strand, 15847375 - 15847449
Alignment:
Q  413 ttaaaatagaaactgtcaaggatattttaggcaataaaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    |||||| | ||| ||| |||| ||||||||||| ||||||||||||||||||||  ||||| |||||||||||||    
T  15847375 ttaaaacaaaaattgtgaagggtattttaggcagtaaaaataggctacaccaaatccatgttttgcctttattaa 15847449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 422 - 487
Target Start/End: Complemental strand, 48278616 - 48278551
Alignment:
Q  422 aaactgtcaaggatattttaggcaataaaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    |||||||||||| ||||||||| | |||||||||||||||| ||||  | ||||||||||||||||    
T  48278616 aaactgtcaagggtattttaggaagtaaaaataggctacacgaaaattaagtattgcctttattaa 48278551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 493 - 548
Target Start/End: Original strand, 2248044 - 2248099
Alignment:
Q  493 tagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 548  Q
    ||||||||||||||| ||||||||  ||||||||||||| |||| |||||||||||    
T  2248044 tagcgtccagacggacactcccgtgtccgtctgtccgctctttctactgcgctaac 2248099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 487
Target Start/End: Original strand, 18509577 - 18509651
Alignment:
Q  413 ttaaaatagaaactgtcaaggatattttaggcaataaaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    |||||| | ||| ||| |||| ||||||||||| ||||||||||||||||||||   |||| |||||||||||||    
T  18509577 ttaaaacaaaaattgtgaagggtattttaggcagtaaaaataggctacaccaaatctatgttttgcctttattaa 18509651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 44201730 - 44201672
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||| ||||||  |||||||| |||||||||||||| |||| ||||||||||||    
T  44201730 actagcgtctagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacg 44201672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 552
Target Start/End: Complemental strand, 46123066 - 46123005
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 552  Q
    ||||||||||||||||  |||||||| ||||||||| ||| ||||  |||||||||||||||    
T  46123066 actagcgtccagacgggcactcccgtgcccgtctgttcgcattttttactgcgctaacgtat 46123005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 549
Target Start/End: Complemental strand, 19193866 - 19193807
Alignment:
Q  490 gactagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    |||||||||||||||||  ||||| || || ||||||||||| |||| ||||||||||||    
T  19193866 gactagcgtccagacgggcactcctgtgcctgtctgtccgctctttctactgcgctaacg 19193807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 491 - 553
Target Start/End: Original strand, 6549 - 6611
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatg 553  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| ||||||||||||||||    
T  6549 actagcgtccagacgggcactcccgtacccgtctgtccgctttttctactgcgctaacgtatg 6611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 491 - 553
Target Start/End: Complemental strand, 2707193 - 2707131
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatg 553  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| ||||||||||||||||    
T  2707193 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaacgtatg 2707131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 553
Target Start/End: Complemental strand, 31898643 - 31898581
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatg 553  Q
    ||||||||||||||||  |||||||| ||||||| |||||| |||| ||||||||||||||||    
T  31898643 actagcgtccagacgggcactcccgtgcccgtctatccgctctttctactgcgctaacgtatg 31898581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 548
Target Start/End: Original strand, 45073808 - 45073861
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 548  Q
    ||||||||||||||    |||||||| |||||||||||||||||||||||||||||||    
T  45073808 actagcgtccagac----actcccgtgcccgtctgtccgctttttccactgcgctaac 45073861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 24863912 - 24863970
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||||||  |||| ||| || |||||||||||||||| ||||||||||||    
T  24863912 actagcgtccagacgggcactctcgtgcctgtctgtccgctttttctactgcgctaacg 24863970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 25417080 - 25417138
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||| ||| ||||| || |||||||||||||| |||| ||||||||||||    
T  25417080 actagcgtccagatggacactcctgtgcccgtctgtccgctctttctactgcgctaacg 25417138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 553
Target Start/End: Complemental strand, 39907580 - 39907536
Alignment:
Q  509 actcccgttcccgtctgtccgctttttccactgcgctaacgtatg 553  Q
    |||||||||||||| |||||| |||||| ||||||||||||||||    
T  39907580 actcccgttcccgtttgtccgttttttctactgcgctaacgtatg 39907536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 24079567 - 24079509
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    |||||||||||||| |  ||||||||  ||||||||||||| |||| ||||||||||||    
T  24079567 actagcgtccagacaggcactcccgtgtccgtctgtccgctctttctactgcgctaacg 24079509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 491 - 552
Target Start/End: Original strand, 46284 - 46345
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 552  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||||    
T  46284 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaacgtat 46345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 847 - 789
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| ||||||||||||    
T  847 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaacg 789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 494 - 553
Target Start/End: Complemental strand, 4642 - 4583
Alignment:
Q  494 agcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatg 553  Q
    ||||||||||||| ||||||||| ||||||||||| || |||| ||||||||||||||||    
T  4642 agcgtccagacgggtactcccgtgcccgtctgtccactctttctactgcgctaacgtatg 4583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 52596 - 52538
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| ||||||||||||    
T  52596 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacg 52538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 491 - 548
Target Start/End: Complemental strand, 43593904 - 43593847
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 548  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| |||||||||||    
T  43593904 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaac 43593847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 552
Target Start/End: Original strand, 35577352 - 35577413
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 552  Q
    ||||||||||||||||  |||||||| ||||||||||||| ||||  | |||||||||||||    
T  35577352 actagcgtccagacgggcactcccgtgcccgtctgtccgcattttttattgcgctaacgtat 35577413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 582
Target Start/End: Original strand, 51033336 - 51033401
Alignment:
Q  517 tcccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataa 582  Q
    |||||||||||   |||||| | ||||||||| ||||  |||||||||||||||||||||||||||    
T  51033336 tcccgtctgtcatttttttctattgcgctaacatatgtttagatttgattatttttctttatataa 51033401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 16612222 - 16612280
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    |||||||||| |||||| ||| || | |||||||||||||| |||| ||||||||||||    
T  16612222 actagcgtccggacggacacttccatacccgtctgtccgctctttctactgcgctaacg 16612280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 18811385 - 18811327
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||||||  | |||||| ||||||||||| || |||| ||||||||||||    
T  18811385 actagcgtccagacgggcattcccgtgcccgtctgtccactctttctactgcgctaacg 18811327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 50377326 - 50377384
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    |||||||| |||||||  |||||||| |||||||||||||| |||| |||||| |||||    
T  50377326 actagcgttcagacgggcactcccgtgcccgtctgtccgctctttctactgcgttaacg 50377384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 543
Target Start/End: Complemental strand, 5257 - 5207
Alignment:
Q  492 ctagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcg 543  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||| ||||||    
T  5257 ctagcgtccagacggacactcc-gttcccgtctgttcgctttttctactgcg 5207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 487
Target Start/End: Original strand, 33866 - 33905
Alignment:
Q  448 aaaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  33866 aaaaaaaggctacaccaaaagcaagtattgcctttattaa 33905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 449 - 487
Target Start/End: Original strand, 11573 - 11611
Alignment:
Q  449 aaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  11573 aaaataggctacaccaaaaccaagtattgcctttattaa 11611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 449 - 487
Target Start/End: Original strand, 25873 - 25911
Alignment:
Q  449 aaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  25873 aaaataggctacaccaaaaccaagtattgcctttattaa 25911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 553
Target Start/End: Complemental strand, 28500 - 28438
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatg 553  Q
    |||||||||||||| |  |||||| | ||||||| ||||||||||| |||||||||| |||||    
T  28500 actagcgtccagacaggcactcccatgcccgtctatccgctttttctactgcgctaatgtatg 28438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 102232 - 102290
Alignment:
Q  491 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 549  Q
    ||||||||||||||||  |||||||| ||||| |||||||| |||| ||||||| ||||    
T  102232 actagcgtccagacgggcactcccgtgcccgtttgtccgctctttctactgcgccaacg 102290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 467
Target Start/End: Complemental strand, 440 - 395
Alignment:
Q  422 aaactgtcaaggatattttaggcaataaaaataggctacaccaaaa 467  Q
    |||||||||||| ||||| ||| | |||||||||||||||||||||    
T  440 aaactgtcaagggtatttaaggaagtaaaaataggctacaccaaaa 395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 553
Target Start/End: Complemental strand, 42510 - 42469
Alignment:
Q  512 cccgttcccgtctgtccgctttttccactgcgctaacgtatg 553  Q
    ||||| ||||||||||||||||||| | ||||||||||||||    
T  42510 cccgtgcccgtctgtccgctttttctagtgcgctaacgtatg 42469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 487
Target Start/End: Original strand, 1634 - 1683
Alignment:
Q  438 tttaggcaataaaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    |||||| || |||||||||||||||||||||  ||| |||||||||||||    
T  1634 tttaggtaaaaaaaataggctacaccaaaagtgtgttttgcctttattaa 1683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 487
Target Start/End: Original strand, 7145 - 7194
Alignment:
Q  438 tttaggcaataaaaataggctacaccaaaagcatgtattgcctttattaa 487  Q
    |||||| || |||||||||||||||||||||  ||| |||||||||||||    
T  7145 tttaggtaaaaaaaataggctacaccaaaagtgtgttttgcctttattaa 7194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University