View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12542_low_10 (Length: 383)
Name: NF12542_low_10
Description: NF12542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12542_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 32803302 - 32802942
Alignment:
| Q |
1 |
aaggtgcagtcgaagttggtaaccgaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacctatctttgtaacaagagatagcccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32803302 |
aaggtgcagtcgaagttggtaaccgaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacctatctttgtaacaagagatagcccaaa |
32803203 |
T |
|
| Q |
101 |
tgctttgaagagccatgtcatggaggtagctggtggagctgatatagcagaaagtgtagcacaattcgcaagaaggcgtcaacgcggtgtttgtgttctc |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32803202 |
tgctttgaagagccatgtcatggaggtagccggtggagctgatatagcagaaagtgtagcacaattcgcaaggaggcgtcaacgcggtgtttgtgttctc |
32803103 |
T |
|
| Q |
201 |
agtggaagtggctctgtagctaatgttactcttagacaaccttcagctcctggtgccgttgtagcacttcatggcaggtttgagattttgtccttaaccg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32803102 |
agtggaagtggctctgtagctaatgttactcttagacaaccttcagctcctggtgccgttgtagcacttcatggcaggtttgagattttgtccttaaccg |
32803003 |
T |
|
| Q |
301 |
ggacatttctacctggtcctgctccaccaggttcaaccggtcttacagtgtacctggctgg |
361 |
Q |
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| T |
32803002 |
ggacatttctacctggtcctgctccaccaggttcaactggtcttacagtgtacctggctgg |
32802942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 16578593 - 16578945
Alignment:
| Q |
1 |
aaggtgcagtcgaagttggtaaccgaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacctatctttgtaacaagagatagcccaaa |
100 |
Q |
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|||||||||| ||| |||| |||||||||||||||||||||||||| || || ||||||| |||||||||||| ||||| ||||||||||| || ||||| |
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| T |
16578593 |
aaggtgcagttgaaattggaaaccgaagaccaagaggaagaccacccggttcaaaaaacaaaccaaaaccaccaatcttcgtaacaagagacagtccaaa |
16578692 |
T |
|
| Q |
101 |
tgctttgaagagccatgtcatggaggtagctggtggagctgatatagcagaaagtgtagcacaattcgcaagaaggcgtcaacgcggtgtttgtgttctc |
200 |
Q |
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| | |||| |||||||| ||||| ||| | ||||| ||| |||| ||||||||||| || || ||||||||||| |||||||| ||||||||||| |
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| T |
16578693 |
ttcactgaaaagccatgtgatggaagtatcctccggagcagatgtagccgaaagtgtagcccagtttgcaagaaggcgacaacgcggggtttgtgttcta |
16578792 |
T |
|
| Q |
201 |
agtggaagtggctctgtagctaatgttactcttagacaaccttcagctcctggtgccgttgtagcacttcatggcaggtttgagattttgtccttaaccg |
300 |
Q |
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|| || ||||| || || || |||||||| |||||||||||| |||| || || || ||||||||||||||||| |||||||| ||| | || ||||||| |
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| T |
16578793 |
agcggtagtggatcagttgcaaatgttacccttagacaacctgcagcaccaggagctgttgtagcacttcatggaaggtttgatattctatcattaaccg |
16578892 |
T |
|
| Q |
301 |
ggacatttctacctggtcctgctccaccaggttcaaccggtcttacagtgtac |
353 |
Q |
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| | |||||||| || |||||||| ||||| ||||||| || ||||||||| |
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| T |
16578893 |
gagcttttctaccaggacctgctcctccaggcgcaaccggactcacagtgtac |
16578945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 298
Target Start/End: Complemental strand, 32809702 - 32809558
Alignment:
| Q |
157 |
tagcacaattcgcaagaaggcgtcaacgcggtg-tttgtgttctcagtggaagtggctctgta-----gctaatgttactcttagacaaccttcagctcc |
250 |
Q |
| |
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|||||||||||||||||||||||||| | |||| ||| | || | |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32809702 |
tagcacaattcgcaagaaggcgtcaatgtggtgctttttttttttagtggaagtggctctgtatagcagctaatgttactcttagacaaccttcagctct |
32809603 |
T |
|
| Q |
251 |
tggtgccgttgtagcacttcatggcaggtttgagattttgtccttaac |
298 |
Q |
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|||||| |||||||||||||| |||| ||||||||||||||||||| |
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| T |
32809602 |
tggtgctgttgtagcacttca---caggattgagattttgtccttaac |
32809558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 32809747 - 32809703
Alignment:
| Q |
16 |
ttggtaaccgaagaccaagaggaagaccacctggatccaaaaaca |
60 |
Q |
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| T |
32809747 |
ttggtaaccgaagaccaagaggaagaccacctggatccaaaaaca |
32809703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 3332434 - 3332386
Alignment:
| Q |
25 |
gaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacc |
73 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
3332434 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccacc |
3332386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 13212892 - 13212840
Alignment:
| Q |
25 |
gaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacctatc |
77 |
Q |
| |
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|||||||||||||||||||| | || || ||||||| |||||||||||||||| |
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| T |
13212892 |
gaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccacctatc |
13212840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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