View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12542_low_11 (Length: 356)
Name: NF12542_low_11
Description: NF12542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12542_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 48966012 - 48965695
Alignment:
| Q |
17 |
actggcaagagagcttggattgcagccacatcaggttgctatatgattttagaaaagaagagctccatggaagccaattataaccatttggcctcacatc |
116 |
Q |
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| T |
48966012 |
actggcaagagagcttggattgcagccacatcaggttgctatatgattttagaaaagaagagctccatggaagccaattataaccatttggcctcacatc |
48965913 |
T |
|
| Q |
117 |
acagtttgttgctcttacgaaagagcaccaggcattgctgctattgctggttcttaaattagactaattaacattcattatcagtgtttgtgatttttgt |
216 |
Q |
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| T |
48965912 |
acagtttgttgctcttaagaaagagcaccaggcattgctgctattgctggttcttaaattatactaattaacattcattattagtgtttgtgattttctt |
48965813 |
T |
|
| Q |
217 |
tttagtaaacagatgcaatgttgaatgatcaaatgcaaaagccaacaaaacaatgatgcaaacatcacatgtagtgaatcagaaaatgtagaaaggtcag |
316 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
48965812 |
tttagtaaacagatgcaatgttgaatgatccaatgc-aaagccaacaaaacaatgtagcaaacatcatatgtagttaatcagaaaatgtagaaaggtcag |
48965714 |
T |
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| Q |
317 |
atcacatgtgtggtgtgtt |
335 |
Q |
| |
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|||||||||||||| |||| |
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| T |
48965713 |
atcacatgtgtggtttgtt |
48965695 |
T |
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