View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12542_low_13 (Length: 330)

Name: NF12542_low_13
Description: NF12542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12542_low_13
NF12542_low_13
[»] chr2 (5 HSPs)
chr2 (18-318)||(31330512-31330812)
chr2 (18-318)||(31337233-31337533)
chr2 (46-255)||(2694672-2694868)
chr2 (232-309)||(31316273-31316352)
chr2 (18-54)||(2695958-2695994)
[»] chr8 (3 HSPs)
chr8 (18-255)||(5559074-5559297)
chr8 (18-155)||(25637223-25637360)
chr8 (177-294)||(34149980-34150098)
[»] chr5 (2 HSPs)
chr5 (18-255)||(37367646-37367870)
chr5 (18-255)||(41529703-41529926)
[»] chr4 (1 HSPs)
chr4 (198-318)||(31662636-31662756)
[»] chr3 (2 HSPs)
chr3 (46-255)||(19357899-19358094)
chr3 (224-309)||(18112715-18112802)
[»] chr7 (3 HSPs)
chr7 (18-179)||(4342566-4342727)
chr7 (18-179)||(3077439-3077601)
chr7 (214-255)||(34455281-34455322)
[»] chr6 (1 HSPs)
chr6 (187-294)||(5248687-5248795)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 31330812 - 31330512
Alignment:
Q  18 agcttttcattccgaacagcaacaacagcaaaattgatactactaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatactt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31330812 agcttttcattccgaacagcaacaacagcaaaattgatactactaacagcccaaaaacagagtcatcacagaatgccaaatgaaataacagcttatactt 31330713  T
Q  118 ctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31330712 ctaatgaatcaacataacttaaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagtttcaacattcag 31330613  T
Q  218 cccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330612 cccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttc 31330513  T
Q  318 a 318  Q
    |    
T  31330512 a 31330512  T

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Target: chr2; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 31337533 - 31337233
Alignment:
Q  18 agcttttcattccgaacagcaacaacagcaaaattgatactactaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatactt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31337533 agcttttcattccgaacagcaacaacagcaaaattgatactactaacagcccaaaaacagagtcatcacagaatgccaaatgaaataacagcttatactt 31337434  T
Q  118 ctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31337433 ctaatgaatcaacataacttaaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagtttcaacattcag 31337334  T
Q  218 cccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31337333 cccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttc 31337234  T
Q  318 a 318  Q
    |    
T  31337233 a 31337233  T

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Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 46 - 255
Target Start/End: Complemental strand, 2694868 - 2694672
Alignment:
Q  46 caaaattgatactactaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttct 145  Q
    ||||||| ||||||||||||||||||||||||||| ||| |||||| |||||   | | ||| ||||||| |||||| |||||||||||||| |||||||    
T  2694868 caaaatttatactactaacagcccaaaaacagagttatcgcagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatttct 2694769  T
Q  146 tctcaaaataatcactttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagcca 245  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||             |||||||||||||| |||||||||||||||||    
T  2694768 tctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacat-------------tcagcccctgcctcaatcttcttgccaagcca 2694682  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 31316273 - 31316352
Alignment:
Q  232 ttcttgccaagccaaa-ccctagctcttggtgtcttgccttaatcttgctcaagcttgcctcta--gctcaaaatacaaca 309  Q
    |||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||  |||||||| ||||||    
T  31316273 ttcttgccaagccaaaaccctagctcttg-tgtcttgcattaatcttgctcaaacttgcctctaatgctcaaaacacaaca 31316352  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 2695994 - 2695958
Alignment:
Q  18 agcttttcattccgaacagcaacaacagcaaaattga 54  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  2695994 agcttttcattccaaacagcaacaacaacaaaattga 2695958  T

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Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 5559074 - 5559297
Alignment:
Q  18 agcttttcattccgaacagcaacaacagcaaaattgatactactaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatactt 117  Q
    ||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||||||||| | ||||| |||||   | | ||| ||||||| |    
T  5559074 agcttttcattccaaacagaaacaacaacaaaatttatactactaacagcccaaaaacagagtcat-atagaatcccaaagtcagtaacaacttatacat 5559172  T
Q  118 ctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcag 217  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||             ||||||||    
T  5559173 ctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatactt-------------acattcag 5559259  T
Q  218 cccctgcctctatcttcttgccaagccaaaccctagct 255  Q
    |||||||||| |||||||||||||||||||||||||||    
T  5559260 cccctgcctcaatcttcttgccaagccaaaccctagct 5559297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 25637360 - 25637223
Alignment:
Q  18 agcttttcattccgaacagcaacaacagcaaaattgatactactaacagcccaaaa-acagagtcatcacagaatgccaaatgaaattacagcttatact 116  Q
    ||||||||||||| ||||||||||||| ||| |||| ||||||||| ||||||||| ||||||| ||| |||||| ||||| | ||| ||||||||| ||    
T  25637360 agcttttcattccaaacagcaacaacaacaacattgctactactaagagcccaaaatacagagttatctcagaat-ccaaaggcaataacagcttatgct 25637262  T
Q  117 tctaatgaatcaacataacttaaatttcttctcaaaata 155  Q
    | |||| ||||||||||||||||||||||||||||||||    
T  25637261 tataattaatcaacataacttaaatttcttctcaaaata 25637223  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 177 - 294
Target Start/End: Complemental strand, 34150098 - 34149980
Alignment:
Q  177 gctattaatcacttatacttaca-ttcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatc 275  Q
    |||||| |||||||||||||||| |||| || ||| | ||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  34150098 gctatttatcacttatacttacacttcaatttcaatactcatcccttgactcaatcttcttgccaagccaaaccctagctcttggtgtcttgcctcaatc 34149999  T
Q  276 ttgctcaagcttgcctcta 294  Q
    |||||||||||||||||||    
T  34149998 ttgctcaagcttgcctcta 34149980  T

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Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 37367870 - 37367646
Alignment:
Q  18 agcttttcattccgaacagcaacaacagcaaaattgatactactaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatactt 117  Q
    ||||||||||||| ||||||||||||  ||||||| ||||||||||||||||||||||||| |||||| ||||| |||||   | | ||| ||||||| |    
T  37367870 agcttttcattccaaacagcaacaacgacaaaatttatactactaacagcccaaaaacagattcatcatagaatcccaaagtcagtaacaacttatacat 37367771  T
Q  118 ctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcag 217  Q
    ||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||             ||||    
T  37367770 ctaatcaatcaacataacttgaattgcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacat-------------tcag 37367684  T
Q  218 cccctgcctctatcttcttgccaagccaaaccctagct 255  Q
    |||||||||| |||||||||||||||||||||||||||    
T  37367683 cccctgcctcaatcttcttgccaagccaaaccctagct 37367646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 41529703 - 41529926
Alignment:
Q  18 agcttttcattccgaacagcaacaacagcaaaattgatactactaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatactt 117  Q
    ||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||||||||| | ||||| |||||   | | ||| ||||||| |    
T  41529703 agcttttcattccaaacagaaacaacaacaaaatttatactactaacagcccaaaaacagagtcat-atagaatcccaaagtcagtaacaacttatacat 41529801  T
Q  118 ctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcag 217  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||             ||||||||    
T  41529802 ctaatcaatcaacataacttgaatttcttcccaaaataatcacttttacctcaatttaagctattaatcacttatactt-------------acattcag 41529888  T
Q  218 cccctgcctctatcttcttgccaagccaaaccctagct 255  Q
    |||||||||| |||||||||||||||||||||||||||    
T  41529889 cccctgcctcaatcttcttgccaagccaaaccctagct 41529926  T

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Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 198 - 318
Target Start/End: Complemental strand, 31662756 - 31662636
Alignment:
Q  198 cattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagct 297  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31662756 cattcagtttcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagct 31662657  T
Q  298 caaaatacaacacaaacttca 318  Q
    |||||||||||||||||||||    
T  31662656 caaaatacaacacaaacttca 31662636  T

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Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 46 - 255
Target Start/End: Complemental strand, 19358094 - 19357899
Alignment:
Q  46 caaaattgatactactaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttct 145  Q
    ||||||| |||||||||||||||||||||||||||||| | ||||| |||||   | | ||| ||||||| |||||| |||||||||||||| |||||||    
T  19358094 caaaatttatactactaacagcccaaaaacagagtcat-atagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatttct 19357996  T
Q  146 tctcaaaataatcactttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagcca 245  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||             |||||||||||||| |||||||||||||||||    
T  19357995 tctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacat-------------tcagcccctgcctcaatcttcttgccaagcca 19357909  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 309
Target Start/End: Original strand, 18112715 - 18112802
Alignment:
Q  224 cctctatcttcttgccaagccaaa-ccctagctcttggtgtcttgccttaatcttgctcaagcttgcctcta--gctcaaaatacaaca 309  Q
    |||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||  |||||||| ||||||    
T  18112715 cctcaatcttcttgccaagccaaaaccctagctcttg-tgtcttgcattaatcttgctcaaacttgcctctaatgctcaaaacacaaca 18112802  T

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Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 4342566 - 4342727
Alignment:
Q  18 agcttttcattccgaacagcaacaacagcaaaattgatactactaacagcccaaaa-acagagtcatcacagaatgccaaatgaaattacagcttatact 116  Q
    ||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||||| ||||||| ||| |||||| ||||| | ||| ||||||||| ||    
T  4342566 agcttttcattccaaacagcaacaacaacaacattgctactactaacagcccaaaatacagagttatctcagaat-ccaaaggcaataacagcttatgct 4342664  T
Q  117 tctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagct 179  Q
    | |||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  4342665 tataattaatcaacataacttaaatttcttctcaaaataagcacttttacctcaattttagct 4342727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 3077601 - 3077439
Alignment:
Q  18 agcttttcattccgaacagcaacaacagcaaaat-tgatactactaacagcccaaaa-acagagtcatcacagaatgccaaatgaaattacagcttatac 115  Q
    ||||| ||||||| |||||||||||||||||||  |||| |||||| |||||||| | | | |||||||||||||  | ||| | ||| ||| ||||| |    
T  3077601 agcttctcattccaaacagcaacaacagcaaaaaatgatgctactaccagcccaacatataaagtcatcacagaaatc-aaaggcaataacaacttatgc 3077503  T
Q  116 ttctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagct 179  Q
    ||||||| | ||||||||||||||| |   |||||||||||||| ||| |||||| ||| ||||    
T  3077502 ttctaatcattcaacataacttaaactatatctcaaaataatcatttttacctcacttttagct 3077439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 34455322 - 34455281
Alignment:
Q  214 tcagcccctgcctctatcttcttgccaagccaaaccctagct 255  Q
    ||||||| ||| || |||||||||||||||||||||||||||    
T  34455322 tcagcccttgcttcaatcttcttgccaagccaaaccctagct 34455281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 294
Target Start/End: Complemental strand, 5248795 - 5248687
Alignment:
Q  187 acttatacttaca-ttcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagc 285  Q
    ||||||||||||| |||| || ||| | ||||||| || ||| || || |||||||||||||||||| |||||||||||||| || ||||||||| ||||    
T  5248795 acttatacttacacttcaatttcaatactcagcccttgtctcgattttattgccaagccaaaccctatctcttggtgtcttgactcaatcttgctaaagc 5248696  T
Q  286 ttgcctcta 294  Q
    |||||||||    
T  5248695 ttgcctcta 5248687  T

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