View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12542_low_15 (Length: 280)
Name: NF12542_low_15
Description: NF12542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12542_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 4646403 - 4646666
Alignment:
| Q |
1 |
tcttgatgccaagagacaacaatttattgtacaatttttcagattcaggaagtgctggggctgttccaagatcaacccattgattaaataatgtatcatt |
100 |
Q |
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| T |
4646403 |
tcttgataccaagagacaacaatttattgtacaattttttagattcaggaagtgctggtgctgttccaagatcaacccattgattaaataatgtatcatt |
4646502 |
T |
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| Q |
101 |
gtatggttccaccctatcaattcattatatatatgtgttaaatagcatatatatacaaaaagtaaaacaaaatgcaaagttagagtatgaaaactaaaga |
200 |
Q |
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| T |
4646503 |
gtatggttccaccctatcaattcattatatatatgtgttaaatagcatatatatacaaaaagtaaaacaaaatgcaaagttagagtatgaaaactaaaga |
4646602 |
T |
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| Q |
201 |
taaagatgatcgatcatacccaaatccgtgtttagcataatatggaagatttgatagtgaagtt |
264 |
Q |
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| T |
4646603 |
taaagatgatcgatcatacccaaatccgtgtttagcataatatggaagatttgatagtgaagtt |
4646666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 23699227 - 23699176
Alignment:
| Q |
213 |
atcatacccaaatccgtgtttagcataatatggaagatttgatagtgaagtt |
264 |
Q |
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| T |
23699227 |
atcatacccaaatccgtgtttagcataatatggaagatttgatagggaagtt |
23699176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 41872647 - 41872765
Alignment:
| Q |
1 |
tcttgatgccaagagacaacaatttattgtacaatttttcagattcaggaagtgctggggctgttccaagatcaacccattgattaaataatgtatcatt |
100 |
Q |
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| T |
41872647 |
tcttgataccaagagacaatagtttattgtaaagtttttgagattctggcagtgctggtgctgtgccaaggtctgcccattcattaaacgacgtcgcatt |
41872746 |
T |
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| Q |
101 |
gtatggttccaccctatca |
119 |
Q |
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| T |
41872747 |
gaatggttccaccctatca |
41872765 |
T |
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