View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12542_low_16 (Length: 273)
Name: NF12542_low_16
Description: NF12542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12542_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 12267799 - 12267551
Alignment:
| Q |
1 |
aggattttgaaacatgtaagcatccttataaaacatctctccattggttgatttgttccatgcgtacattttacaaaatagaaaagnnnnnnngatgagg |
100 |
Q |
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| T |
12267799 |
aggattttgaaacatgtaagcatccttataaaacatctcaccattggttgatttgttccatgcgtacattttacaaaatagaaaagaaaaagagatgagg |
12267700 |
T |
|
| Q |
101 |
ataaaccatttctgattattaatcaaatcttcgcctatattctatactctcttttattcttgacctatattctctatgctcnnnnnnnctcagaaggttt |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12267699 |
ataaaccatttctgattattaatcaaatcttggcctatattctatactctcttttattcttgacctatattctctatgctctttttttctcagaaggttt |
12267600 |
T |
|
| Q |
201 |
tattcctctagatttttctgacaaggtttttaaagagacagatgttgag |
249 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12267599 |
tattcctctagatttttctgactaggtttttaaagagacagatgttgag |
12267551 |
T |
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