View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12542_low_18 (Length: 249)
Name: NF12542_low_18
Description: NF12542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12542_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 49007507 - 49007292
Alignment:
| Q |
13 |
gttcactgcagatgtagctacaaaaatgtttttctccatagctgcaaatgtggctatagctacaggatcttcatacaaaggtgcctcatcaaaccccaat |
112 |
Q |
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| T |
49007507 |
gttccctgcagatgtagatacaaaaatgtttttctccatagctgcaaatgtggctatagctacaggatcttcatacaaaggtgcctcatcaaaccccaat |
49007408 |
T |
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| Q |
113 |
gataatgaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatgcatatgctccttctttccacaacaccttgtacatgg |
212 |
Q |
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| T |
49007407 |
gataatgaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatgcatatgctccttctttccacaacaccttgtacatgg |
49007308 |
T |
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| Q |
213 |
atacatgagcatgtgg |
228 |
Q |
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| T |
49007307 |
atacatgagcatgtgg |
49007292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 34963365 - 34963494
Alignment:
| Q |
47 |
tccatagctgcaaatgtggctatagctacaggatcttcatacaaaggtgcctcatcaaaccccaatgataatgaaagaacatctacaccatctgatattg |
146 |
Q |
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| T |
34963365 |
tccatagctgcaaatgttgctatagctacggcatcttcatacaaaggtacgtcattaattccaaatgataatgaaataacatcgacaccgtcggatattg |
34963464 |
T |
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| Q |
147 |
cactatcaattgcagctattgtatcagatg |
176 |
Q |
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| T |
34963465 |
cagcgtcaattgcagctattacatcagatg |
34963494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 176
Target Start/End: Complemental strand, 8957476 - 8957347
Alignment:
| Q |
47 |
tccatagctgcaaatgtggctatagctacaggatcttcatacaaaggtgcctcatcaaaccccaatgataatgaaagaacatctacaccatctgatattg |
146 |
Q |
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| T |
8957476 |
tccatagctgcaaatgttgcaatggcaacaggatcgtcatacaaaggcacgtcattaataccaaatgatagtgaaagaacatcaacaccgtctgatattg |
8957377 |
T |
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| Q |
147 |
cactatcaattgcagctattgtatcagatg |
176 |
Q |
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| T |
8957376 |
ccgcgtcaattgcggctattacatcagatg |
8957347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 8962424 - 8962358
Alignment:
| Q |
110 |
aatgataatgaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatg |
176 |
Q |
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| T |
8962424 |
aatgatattgaaagaacatccacaccgtctgatattgcggcatcaattgcagctattgtgtcagatg |
8962358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 8946675 - 8946732
Alignment:
| Q |
119 |
gaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatg |
176 |
Q |
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| T |
8946675 |
gaaagaacatcaacaccgtccgatattgcagcatcaattgcagccattatatcagatg |
8946732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 21687719 - 21687877
Alignment:
| Q |
18 |
ctgcagatgtagctacaaaaatgtttttctccatagctgcaaatgtggctatagctacaggatcttcatacaaaggtgcctcatcaaaccccaatgataa |
117 |
Q |
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||||||| |||| |||||||| ||| ||||||||||||||||| || || || || ||||||| ||||||| | |||||| | || | ||||| |
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| T |
21687719 |
ctgcagaagtagacacaaaaatacctttttccatagctgcaaatgtcgcaattgcaactggatctttatacaaaagaagatcatcagagccaagtgatat |
21687818 |
T |
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| Q |
118 |
tgaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatg |
176 |
Q |
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|||||||| || ||||| || ||||||||| |||||||||||||||| ||||||||| |
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| T |
21687819 |
tgaaagaatgtcaacaccgtcagatattgcagcatcaattgcagctattatatcagatg |
21687877 |
T |
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