View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12542_low_20 (Length: 245)
Name: NF12542_low_20
Description: NF12542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12542_low_20 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 73124 - 72897
Alignment:
| Q |
14 |
aaatataaccactgtgagctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattcccttt |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
73124 |
aaatgtaaccactgtgagctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattcccttt |
73025 |
T |
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| Q |
114 |
gacattatcatgttggatgtgtaaaaatgggagggttacgataattcgtaaaatgcgagtaaatcggttttagaattttaagataaaatgagatcatgta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
73024 |
gacattatcatgttggatgtgtaaaaatgggagggttacgataattcgtaaaatgcgagtaaattggttttagaatttcaagataaaatgagatcatgtc |
72925 |
T |
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| Q |
214 |
ttttgaattctctctattgttcgttgttca |
243 |
Q |
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||||||||| |||||||| |||||||||| |
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| T |
72924 |
ttttgaatt--ctctattgctcgttgttca |
72897 |
T |
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Back To:
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Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 8437843 - 8438055
Alignment:
| Q |
14 |
aaatataaccactgtgagctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattcccttt |
113 |
Q |
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|||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437843 |
aaatgtaaccaccgtaagctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattcccttt |
8437942 |
T |
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| Q |
114 |
gacattatcatgttggatgtgtaaaaatgggagggttacgataattcgtaaaatgcgagtaaatcggttttagaattttaagataaaatgagatcatgta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8437943 |
gacattatcatgttggatgtgtaaaaatgggagggttacgataatttgtaaaatgcgagtaaatcggttttagaatttcaagataaaatgagatcatgtc |
8438042 |
T |
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| Q |
214 |
ttttgaattctct |
226 |
Q |
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|| |||||||||| |
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| T |
8438043 |
ttctgaattctct |
8438055 |
T |
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