View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12542_low_22 (Length: 228)
Name: NF12542_low_22
Description: NF12542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12542_low_22 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 40948097 - 40948216
Alignment:
| Q |
16 |
aagaatgtgaaatgttgagcacttctaagtcttttagctcatctaatattaaaatgagagcttctttcgacaaccctgaacatcgaagactcaacacttt |
115 |
Q |
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| T |
40948097 |
aagaatgtgaaatgttgagcacttctaagtcttttagctcatctaatattaaaatgagagcttctttcgacaaccctgaacatcgaagactcaacacttt |
40948196 |
T |
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| Q |
116 |
caagtttggaagaaatgcaa |
135 |
Q |
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| T |
40948197 |
caagtttggaagaaatgcaa |
40948216 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 40948216 - 40948260
Alignment:
| Q |
171 |
atgaccttgagttctctaaagttcttgcaatgctttgtaatttct |
215 |
Q |
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| T |
40948216 |
atgaccttgagttctctaaagttcttgcaatgctttgtaatttct |
40948260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 45656418 - 45656227
Alignment:
| Q |
16 |
aagaatgtgaaatgttgagcacttctaagtcttttagctcatctaatattaaaatgagagct-tctttcgacaaccctgaacatcgaagactcaacactt |
114 |
Q |
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| T |
45656418 |
aagaatgtgaaatgttgagcacttccaaatgttttagcttatttagaattaaaatgagagctctcttt-gacaatcctgaacatcgcagactcaatactt |
45656320 |
T |
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| Q |
115 |
tcaagtttggaagaaatgcaacgagtgaggcagcaaatttcatgtcaagacaccccatgaccttgagttctctaaagttcttgcaatgctttg |
207 |
Q |
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| T |
45656319 |
ttaggtttggaagacatcttgtgagtgcataagcaaattgtatgccaatgcaacccataaccttgagttctctaaagttcttgcaatgctttg |
45656227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 38624 - 38736
Alignment:
| Q |
16 |
aagaatgtgaaatgttgagcacttctaagtcttttagctcatctaatattaaaatgagagcttctttcgacaaccctgaacatcgaagactcaacacttt |
115 |
Q |
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||||||||||||| || ||||||||||| | || || |||||| ||||| ||||||||||||||| ||||||||||||||||| |||||| ||| | |
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| T |
38624 |
aagaatgtgaaatatttagcacttctaaatattgtaatctatctaaaattaagatgagagcttctttcaccaaccctgaacatcgaatactcaatactct |
38723 |
T |
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| Q |
116 |
caagtttggaaga |
128 |
Q |
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|||||||||||| |
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| T |
38724 |
taagtttggaaga |
38736 |
T |
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