View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12542_low_4 (Length: 508)
Name: NF12542_low_4
Description: NF12542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12542_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 105 - 490
Target Start/End: Original strand, 38750902 - 38751287
Alignment:
| Q |
105 |
caaaaaatcgatttttatagtgattgtcaaagacataaaggaggtatttaacaagctattataaactataatgtgaattaaaaccaactttggttcggcc |
204 |
Q |
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| T |
38750902 |
caaaaaatcgatttttatagtgattgtcaaagacataaaggaggtatttaacaagctattataaactataatgtgaattaaaaccaactttggttcggcc |
38751001 |
T |
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| Q |
205 |
taccgaaaatgactagcctctacaacattcgaatcatggtttgaattctagctgaaagagatgttgatcaagtaatggaaaatctgaaagaaataactaa |
304 |
Q |
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| T |
38751002 |
taccgaaaatgactagcctctacaacattcgaatcatggtttgaattctagctgaaagagatgttgatcaagtaatggaaaatctgaaagaaataactaa |
38751101 |
T |
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| Q |
305 |
gtcaaaatctaaatatcagcctcagctatacatgaaaagatggttatcttcaaatgccaacaaaaaacaatcaaagcaatccattacagactttaacatt |
404 |
Q |
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| T |
38751102 |
gtcaaaatctaaatatcagcctcagctatacatgaaaagatggttatcttcaaatgccaacaaaaaacaatcaaagcaatccattacagactttaacatt |
38751201 |
T |
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| Q |
405 |
atcatggaaagctctgaacataaaactaattattcttattaatcaagattactaggatgaaccctcttttttccacaaagaggaac |
490 |
Q |
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| T |
38751202 |
atcatggaaagctctgaacataaaactaattattcttattaatcaagattactaggatgaaccctcttttttccacaaagaggaac |
38751287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38750797 - 38750839
Alignment:
| Q |
1 |
cctgataagcattgtggcgttataaatgaactggtcttaccac |
43 |
Q |
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| T |
38750797 |
cctgataagcattgtggcgttataaatgaactggtcttaccac |
38750839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 334 - 490
Target Start/End: Complemental strand, 3021318 - 3021162
Alignment:
| Q |
334 |
acatgaaaagatggttatcttcaaatgccaacaaaaaacaatcaaagcaatccattacagactttaacattatcatggaaagctctgaacataaaactaa |
433 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021318 |
acatgaaaagatggttctcttcaaatgccaacaaaaaacaatcaaagaaatccattacagactttaacattatcatggaaagctctgaacataaaactaa |
3021219 |
T |
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| Q |
434 |
ttattcttattaatcaagattactaggatgaaccctcttttttccacaaagaggaac |
490 |
Q |
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| T |
3021218 |
ttattcttattaatcaagattactaggatgaaccctcttttttccacaaagaggaac |
3021162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 3021421 - 3021368
Alignment:
| Q |
115 |
atttttatagtgattgtcaaagacataaaggaggtatttaacaagctattataaa |
169 |
Q |
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||||||||||||||| |||| ||||||||| ||||| |||| ||||||||||||| |
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| T |
3021421 |
atttttatagtgattatcaa-gacataaagaaggtaattaaaaagctattataaa |
3021368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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