View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12542_low_5 (Length: 491)
Name: NF12542_low_5
Description: NF12542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12542_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 40 - 481
Target Start/End: Original strand, 41704957 - 41705398
Alignment:
| Q |
40 |
taagagtgcaggtgagaagacgagtgaggaagtctatgcgagaaagagttttgggttattttgaaaatttaatttcacattaaggatatttttgtcgttt |
139 |
Q |
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| T |
41704957 |
taagagtgcaggtgagaagacgagtgaggaagtctatgcgagaaagagttttgggttattttgaaaatttaatttcacattaaggatatttttgttgttt |
41705056 |
T |
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| Q |
140 |
tagggtgtaaccaagtttgaaagtggtgttactatcaaataatattttcatagttgtttctgacatagaatcaatgaaatcagatgagttttggaggcaa |
239 |
Q |
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| T |
41705057 |
tagggtgtaaccaagtttgaaagtggtgttactatcaaataatattttcatagttgtttttgacatagaatcaatgaaatcagatgagttttggaggcaa |
41705156 |
T |
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| Q |
240 |
aaagactaagatttggattgcaaatatgcacaacagtatgtacggccttatatagcaccctgaaataaacatttggggatgaaaacacgtttgcatgagg |
339 |
Q |
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| T |
41705157 |
aaagactaagatttggattgcaaatatgcacaacagtatgtacggccttatatagcaccctgaaataaacatttggggatgaaaacacatttgcatgagg |
41705256 |
T |
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| Q |
340 |
actaccaggactgtgcgtaggggtgaagcatgcatcgtgcatgtgtctgagtggcacatgtcacacaccgcctcaatcacaaaggccgagcatggtcgac |
439 |
Q |
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| T |
41705257 |
actaccaggactgtgcgtaggggtgaagcatgcatcgtgcatgtgtctgagtggcacatgtcacacaccacctcaatcacaaaggccgagcatggtcgac |
41705356 |
T |
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| Q |
440 |
tgaggggtatgaatagaccagacccgctcacatgggcctatg |
481 |
Q |
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| T |
41705357 |
tgaggggtatgaatagaccagacccgctgacatgggcctatg |
41705398 |
T |
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