View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12542_low_7 (Length: 464)
Name: NF12542_low_7
Description: NF12542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12542_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 21 - 450
Target Start/End: Complemental strand, 37726938 - 37726509
Alignment:
| Q |
21 |
agtcactcaagtggcaaagcacattcttgttatagcatttgggaggaacaaattctgcgtctaaagtagctgaaataggatagttttctccagtttctgt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37726938 |
agtcactcaagtggcaaagcacattcttgttatagcatttgggaggaacaaattctgcgtctaaagtagctgaaataggatagttttctccagtttctgt |
37726839 |
T |
|
| Q |
121 |
ttggttcttatttatgggtaggttgtgaaccgttacaaatatcggaagacagaaagaagagtcgtgatattgtagtttaattgtatcttagcatgatctg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37726838 |
ttggttcttatttatgggtaggttgtgaaccgttacaaatatcggaagacagaaagaagagtcgtgatattgtagtttaattgtatcttagcatgatctg |
37726739 |
T |
|
| Q |
221 |
actgtttactctcatatgcattatttgtgatttgtgaataatcttggtggcatgacttccatcaggatttaaccgaagagaacagaaaaacagcaccccg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37726738 |
actgtttactctcatatgcattatttgtgatttgtgaataatcttggtggcatgacttccatcaggatttaaccgaagagaacagaaaaacaacaccccg |
37726639 |
T |
|
| Q |
321 |
agactatctggaacttgctttgcagtctgttcaagggaacagaaacaatgaattttgttaggttagtttcttatttttgaaaaattatccaagactgaag |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37726638 |
agactatctggaacttgctttgcagtctgttcaagggaacagaaacaatgaattttgttaggttagtttcttatttttgaaaaattatccaagactgaag |
37726539 |
T |
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| Q |
421 |
ctcaaaagagttagaatgagataggcacag |
450 |
Q |
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| T |
37726538 |
ctcaaaagagttagaatgagataggcacag |
37726509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 90 - 366
Target Start/End: Original strand, 34810030 - 34810297
Alignment:
| Q |
90 |
ctgaaataggatagttttctccagtttctgtttggttcttatttatgggtaggttgtgaaccgttacaaatatcggaagacagaaagaagagtcgtgata |
189 |
Q |
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||||||||||| ||||||| ||| ||| ||||||| ||||| |||||||||| ||||| || |||||| |||||||| | |||||||| | ||| |
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| T |
34810030 |
ctgaaataggacagttttccccaatttttgtttggctcttac----gggtaggttgcgaaccattgcaaatactggaagacaaatggaagagtcataata |
34810125 |
T |
|
| Q |
190 |
ttgtagtttaattgtatct----tagcatgatctgactgtttactctcatatgcattatttgtgatttgtgaataatcttggtggcatgacttccatcag |
285 |
Q |
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|||||||||||| || ||| |||||||||||||||||||| |||||| ||| ||||| ||||||||||||||||||| |||||| || | |
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| T |
34810126 |
ttgtagtttaatggtctctctcttagcatgatctgactgtttagtctcat--gcactattt-------gtgaataatcttggtggcaggacttctatttg |
34810216 |
T |
|
| Q |
286 |
gatttaaccgaagagaacagaaaaacagcaccccgagactatctggaacttgctttgcagtctgttcaagggaacagaaac |
366 |
Q |
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|| ||||| ||||| |||||||||| | | || ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34810217 |
gacttaactgaagataacagaaaaataactccacgagactatctggaacttgctttgcggtctgttcaagggaacagaaac |
34810297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 25899202 - 25899121
Alignment:
| Q |
370 |
gaattttgttaggttagtt-tcttatttttgaaaaattatccaagactgaagctcaaaagagttagaatgagataggcacag |
450 |
Q |
| |
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|||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25899202 |
gaattttgttagattagtagtcttattttctaaaaattatccaagactgaagctcaaaagagttagaatgggataggcacag |
25899121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 450
Target Start/End: Original strand, 34810530 - 34810586
Alignment:
| Q |
394 |
tttttgaaaaattatccaagactgaagctcaaaagagttagaatgagataggcacag |
450 |
Q |
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||||| |||||||||| |||| | ||||||||| ||||||||||| |||||||||| |
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| T |
34810530 |
tttttaaaaaattatctaagattaaagctcaaaggagttagaatggcataggcacag |
34810586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 450
Target Start/End: Complemental strand, 16488518 - 16488476
Alignment:
| Q |
408 |
tccaagactgaagctcaaaagagttagaatgagataggcacag |
450 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16488518 |
tccaagactgaagctcaaaagagttagaatgggataggcacag |
16488476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 450
Target Start/End: Original strand, 21814392 - 21814434
Alignment:
| Q |
408 |
tccaagactgaagctcaaaagagttagaatgagataggcacag |
450 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21814392 |
tccaagactgaagctcaaaagagttagaatgggataggcacag |
21814434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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