View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12542_low_8 (Length: 444)
Name: NF12542_low_8
Description: NF12542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12542_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 12307832 - 12307401
Alignment:
| Q |
1 |
actttaacttttatctt-attatatgagtgaatctgaagtataacttgttaagaaatagtgcatcaatcatatgtacnnnnnnngaatattaagaaacgc |
99 |
Q |
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| T |
12307832 |
actttaacttttatctttattatatgagtgaatctgaagtatagcttgttaagaaatagtgcatcaatcatatgtacaaaaaa-gaatattaagagacgc |
12307734 |
T |
|
| Q |
100 |
agaaggataaaatgaggacgaaatgatatttaaatgaaagaaggaatttctttgaannnnnnnnattcatgtagtttctaggtacatggacctatttcta |
199 |
Q |
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| T |
12307733 |
agaaggataaaatgaggacgaaatgatatttaaatgaattaaggaatttctttgaattttttttattcatgtagtttctaggtacatggacctatttcta |
12307634 |
T |
|
| Q |
200 |
caaaaagaatgaattaatatcaaaatgagggggaagcagctgaaagcatttttactttaataagnnnnnnnnncaatggagggacccatgttcctaacaa |
299 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12307633 |
caaaaagaatgaattaacatcaaaaggagggggaagcagctgaaagcatttttactttaataagaaaaaaaa-caatggagggacccatgttcctaacaa |
12307535 |
T |
|
| Q |
300 |
gacctaaacaacggacgaatgtaaacaaatttacattgaaataacgagccactaatccaatttctaaacttcctagttttgcaggtcggtcaggttcacc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12307534 |
gacctaaacaacggacgaatgtaaacaaatttacattgaaataacgagccactaatccaatttctaaacttcctagttttgcaggtcggtcaggttcacc |
12307435 |
T |
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| Q |
400 |
cagcgaagtaggaaaaacaccccggccagtgaac |
433 |
Q |
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| T |
12307434 |
cagcgaagtaggaaaaacaccccggccagagaac |
12307401 |
T |
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