View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12543_high_1_N (Length: 443)
Name: NF12543_high_1_N
Description: NF12543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12543_high_1_N |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 15 - 441
Target Start/End: Original strand, 34899548 - 34899975
Alignment:
| Q |
15 |
acttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttcttagttattaggagaacctcaattagtggg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34899548 |
acttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttcttagttattaggagaacctcaactagtggg |
34899647 |
T |
|
| Q |
115 |
tcagttgacatgtcccacttggtttttatgtggagg-agcacagaagcatatgcaaatgttataataagataggcaagagataccaaattatcatattgt |
213 |
Q |
| |
|
||||||||||||| |||||||||||||||| | | | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899648 |
tcagttgacatgttccacttggtttttatgcgtaagtaccacacaagcatatgcaaatgttataataagataggcaagagataccaaattatcatattgt |
34899747 |
T |
|
| Q |
214 |
cagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactataag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899748 |
cagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactataag |
34899847 |
T |
|
| Q |
314 |
gttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaagt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899848 |
gttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaagt |
34899947 |
T |
|
| Q |
414 |
ttggtagtttcaactttcaagttgagat |
441 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
34899948 |
ttggtagtttcaactttcaagttgagat |
34899975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University