View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12543_high_2 (Length: 420)
Name: NF12543_high_2
Description: NF12543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12543_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 22 - 391
Target Start/End: Complemental strand, 39082835 - 39082466
Alignment:
| Q |
22 |
catcatcatctggagctagaaatctattgccttgactgaaaatagttggggacgaacttccaccgattgcatattgttgccaatgtgtataatcattgtt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39082835 |
catcatcatctggagctagaaatctattgccttgactaaaaatagttggggacgaacttccaccaattgcatattgttgccaatgtgtataatcattgtt |
39082736 |
T |
|
| Q |
122 |
gaccacgtgaaagtatccgaacctgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcgaaataaagagtaaaaatatata |
221 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39082735 |
gaccacatgaaagtatccgaacctgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcaaaataaagagtaaaaatatata |
39082636 |
T |
|
| Q |
222 |
acaaatggcaagtagggcttaattattgtggcagagaaaaattaactaatttacgaaccttggcattcttcccccaagcccttctccaaaatggttaaaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082635 |
acaaatggcaagtagggcttaattattgtggcagagaaaaattaactaatttacaaaccttggcattcttcccccaagcccttctccaaaatggttaaaa |
39082536 |
T |
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| Q |
322 |
gctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaagagcataactttgttat |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082535 |
gctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaagagcataactttgttat |
39082466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 22 - 391
Target Start/End: Complemental strand, 31727458 - 31727103
Alignment:
| Q |
22 |
catcatcatctggagctagaaatctattgccttgactgaaaatagttggggacgaacttccaccgattgcatattgttgccaatgtgtataatcattgtt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31727458 |
catcatcatctggagctagaaatctattgccttgactaaaaatagttcgggacgaacttccaccgattgcatattgttgccaatgtgtgtaatcattgtt |
31727359 |
T |
|
| Q |
122 |
gaccacgtgaaagtatccgaacctgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcgaaataaagagtaaaaatatata |
221 |
Q |
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||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||| |
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| T |
31727358 |
caccacatgaaagtatccgaacctgcatctgcaacattcgtgtagaaaaaatttcaaactgttaggaataa--------------gagtaaaaatatata |
31727273 |
T |
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| Q |
222 |
acaaatggcaagtagggcttaattattgtggcagagaaaaattaactaatttacgaaccttggcattcttcccccaagcccttctccaaaatggttaaaa |
321 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727272 |
acaaatggcaagtagggcttaattactgtggcagagaaaaattaactaataaacctaccttggcattcttcccccaagcccttctccaaaatggttaaaa |
31727173 |
T |
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| Q |
322 |
gctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaagagcataactttgttat |
391 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727172 |
gctatagtagcttgcatatttttgtcctcttcataggaatcactatgaccaaagagcataactttgttat |
31727103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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