View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12543_high_3 (Length: 371)

Name: NF12543_high_3
Description: NF12543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12543_high_3
NF12543_high_3
[»] scaffold0066 (2 HSPs)
scaffold0066 (72-203)||(32979-33108)
scaffold0066 (253-313)||(32874-32934)
[»] chr5 (2 HSPs)
chr5 (22-71)||(23290000-23290049)
chr5 (39-71)||(16304368-16304400)
[»] chr4 (1 HSPs)
chr4 (8-72)||(482184-482248)
[»] chr2 (1 HSPs)
chr2 (20-71)||(18054718-18054769)
[»] chr3 (2 HSPs)
chr3 (20-69)||(11666021-11666070)
chr3 (39-72)||(25948847-25948880)
[»] chr7 (3 HSPs)
chr7 (19-71)||(9778570-9778622)
chr7 (39-71)||(28155639-28155671)
chr7 (7-71)||(29998974-29999038)
[»] chr6 (1 HSPs)
chr6 (20-71)||(9658945-9658997)


Alignment Details
Target: scaffold0066 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 33108 - 32979
Alignment:
Q  72 tatcaccatctcctatcagaagatgcagaagcaggactaagattttcttcttttgggatgaaagatgaaaaaccgattgaaaatctgatcttatacgcgc 171  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33108 tatcaccatctcctatcagaaaatgcagaagcaggactaaggtttt--tcttttgggatgaaagatgaaaaactgattgaaaatctgatcttatacgcgc 33011  T
Q  172 ccgcctccttcgttttgtcttcaaccagcgta 203  Q
    |  |||||||||||||||||||||||||||||    
T  33010 cttcctccttcgttttgtcttcaaccagcgta 32979  T

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Target: scaffold0066; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 32934 - 32874
Alignment:
Q  253 gttagtcacggttaaaataaaagtgtggcaattatagcttaccttatctttctatccaaac 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32934 gttagtcacggttaaaataaaagtgtggcaattatagcttaccttatctttctatccaaac 32874  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 23290049 - 23290000
Alignment:
Q  22 acgtgtctgataccgcaacacgtctaatccaaggaatgtccgtgcttcat 71  Q
    |||||||||| ||||  |||||||||||||||| ||||||||||||||||    
T  23290049 acgtgtctgacaccgggacacgtctaatccaagcaatgtccgtgcttcat 23290000  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 16304400 - 16304368
Alignment:
Q  39 acacgtctaatccaaggaatgtccgtgcttcat 71  Q
    ||||||||||||| |||||||||||||||||||    
T  16304400 acacgtctaatccgaggaatgtccgtgcttcat 16304368  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 482248 - 482184
Alignment:
Q  8 tgtcggtgtcgaacacgtgtctgataccgcaacacgtctaatccaaggaatgtccgtgcttcatt 72  Q
    ||||||||||| |||||||||||| |||  |||||||||||||| | || ||||| |||||||||    
T  482248 tgtcggtgtcggacacgtgtctgacacctgaacacgtctaatccgatgagtgtccatgcttcatt 482184  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 18054769 - 18054718
Alignment:
Q  20 acacgtgtctgataccgcaacacgtctaatccaaggaatgtccgtgcttcat 71  Q
    |||||||||||| || | |||||| || ||||||||||||||||||||||||    
T  18054769 acacgtgtctgacacggaaacacgccttatccaaggaatgtccgtgcttcat 18054718  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 11666021 - 11666070
Alignment:
Q  20 acacgtgtctgataccgcaacacgtctaatccaaggaatgtccgtgcttc 69  Q
    |||||||||||||| || |||||| ||||| |||||| ||||||||||||    
T  11666021 acacgtgtctgatatcggaacacgcctaattcaaggagtgtccgtgcttc 11666070  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 25948880 - 25948847
Alignment:
Q  39 acacgtctaatccaaggaatgtccgtgcttcatt 72  Q
    |||||| |||||||||||||||||||||||||||    
T  25948880 acacgtgtaatccaaggaatgtccgtgcttcatt 25948847  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 9778570 - 9778622
Alignment:
Q  19 aacacgtgtctgataccgcaacacgtctaatccaaggaatgtccgtgcttcat 71  Q
    |||||||||| || ||||  ||||| |||||||||||| ||||||||||||||    
T  9778570 aacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcat 9778622  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 28155639 - 28155671
Alignment:
Q  39 acacgtctaatccaaggaatgtccgtgcttcat 71  Q
    ||||| |||||||||||||||||||||||||||    
T  28155639 acacgcctaatccaaggaatgtccgtgcttcat 28155671  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 29999038 - 29998974
Alignment:
Q  7 gtgtcggtgtcgaacacgtgtctgataccgcaacacgtctaatccaaggaatgtccgtgcttcat 71  Q
    |||||||||||| ||||||||| || |||  |||||||||||||  |||| ||||| ||||||||    
T  29999038 gtgtcggtgtcggacacgtgtccgacacctaaacacgtctaatcggaggagtgtccatgcttcat 29998974  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 9658945 - 9658997
Alignment:
Q  20 acacgtgtctgataccgcaacacgtctaat-ccaaggaatgtccgtgcttcat 71  Q
    |||||||||||| |||| |||||| ||||| ||||||| ||||||||||||||    
T  9658945 acacgtgtctgacaccggaacacgcctaattccaaggagtgtccgtgcttcat 9658997  T

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