View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12543_high_4 (Length: 340)

Name: NF12543_high_4
Description: NF12543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12543_high_4
NF12543_high_4
[»] chr3 (4 HSPs)
chr3 (4-206)||(11294466-11294668)
chr3 (251-331)||(11295286-11295370)
chr3 (68-107)||(30187933-30187972)
chr3 (68-104)||(10948356-10948392)
[»] chr2 (4 HSPs)
chr2 (2-253)||(35430784-35431035)
chr2 (11-253)||(3250643-3250885)
chr2 (69-107)||(33035669-33035707)
chr2 (68-136)||(21829834-21829902)
[»] chr8 (5 HSPs)
chr8 (68-253)||(18004900-18005085)
chr8 (256-319)||(30265373-30265440)
chr8 (148-249)||(6743947-6744048)
chr8 (148-249)||(6654209-6654310)
chr8 (148-249)||(6734611-6734712)
[»] chr1 (4 HSPs)
chr1 (9-253)||(4693465-4693709)
chr1 (11-246)||(42910669-42910904)
chr1 (9-249)||(43913350-43913590)
chr1 (68-107)||(15175245-15175284)
[»] chr7 (6 HSPs)
chr7 (25-227)||(34148931-34149133)
chr7 (25-227)||(34177991-34178193)
chr7 (25-249)||(38432277-38432501)
chr7 (188-249)||(34148852-34148913)
chr7 (188-249)||(34178211-34178272)
chr7 (204-249)||(923506-923551)
[»] chr4 (1 HSPs)
chr4 (26-249)||(17403163-17403386)
[»] scaffold1243 (1 HSPs)
scaffold1243 (9-107)||(1345-1443)
[»] chr6 (4 HSPs)
chr6 (27-107)||(15160837-15160917)
chr6 (9-105)||(15472486-15472582)
chr6 (68-107)||(15184426-15184465)
chr6 (188-237)||(18093169-18093218)
[»] chr5 (1 HSPs)
chr5 (154-249)||(6217844-6217939)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 11294466 - 11294668
Alignment:
Q  4 ctctaccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttat 103  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11294466 ctctatcttgctgtgttctactgttttgcaggatcatgttcttgacagatggcgatgagtgctggatcctattaacggttactccgttaaggggacttat 11294565  T
Q  104 cagtttctaacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggt 203  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  11294566 cagtttctaacacttcctgacacatcaatggagcgtggtctttatgatgcatcatggctgaagcaggtttcgctaaaggttgctatatttgtttggcggt 11294665  T
Q  204 ttc 206  Q
    |||    
T  11294666 ttc 11294668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 11295286 - 11295370
Alignment:
Q  251 gcttatacacataattataaggaat----gaatttgtcccaaatggtataagcaatttattggttttggaatactgtatattctt 331  Q
    |||||||||||||||||||||||||    |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||    
T  11295286 gcttatacacataattataaggaatgaatgaatttgtccgaaatggtataagcaatttattggttttggaatattgtatactctt 11295370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 30187972 - 30187933
Alignment:
Q  68 gatcctattaacggttactccgttaaggggacttatcagt 107  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  30187972 gatcctattaatggttattccgttaaggggacttatcagt 30187933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 10948392 - 10948356
Alignment:
Q  68 gatcctattaacggttactccgttaaggggacttatc 104  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  10948392 gatcccattaatggttactccgttaaggggacttatc 10948356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 2 - 253
Target Start/End: Original strand, 35430784 - 35431035
Alignment:
Q  2 tgctctaccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggactt 101  Q
    |||||| | ||| ||||| ||| ||||||||||||||||||| |||||| |||| | ||     |||||||||||||||||||||| |||||||||||||    
T  35430784 tgctcttctttgatgtgtgctattgttttgcaggatcatgttattgacagatggtgttggactctggatcctattaacggttactctgttaaggggactt 35430883  T
Q  102 atcagtttctaacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcg 201  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||  ||||||||||| |||    
T  35430884 atcagtttcttacacttcctgacacatcaatggagcgtggtctttatgatgcagcatggttgaagcaggtctcgttaaaggtttctatatttgtttagcg 35430983  T
Q  202 gtttctctgcaacagacttcctaccaaagacaatctttttcgtaggagggct 253  Q
      ||||| |||||||||||||||||||||||||| ||||||||| |||||||    
T  35430984 ccttctccgcaacagacttcctaccaaagacaatatttttcgtatgagggct 35431035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 3250885 - 3250643
Alignment:
Q  11 ttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtttc 110  Q
    ||||||||||||  ||||||||||||||||||  |||||| |||| | |||||  | |||||||||||||||||||| |||||||  |||||||||||||    
T  3250885 ttgttgtgttctgttgttttgcaggatcatgtgattgacagatggtgttgagttctagatcctattaacggttactcggttaaggaaacttatcagtttc 3250786  T
Q  111 taacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctg 210  Q
    | ||||||||| |||||||||||||||||||||||| || |||||| ||| ||||| ||||| || ||||||||  ||||||| |||||||| ||||| |    
T  3250785 ttacacttcctaacacatcaatggagcgtggtctttttggtgcagcttggttgaagcaggttccgttaaaggtttctatatttatttggcggcttctccg 3250686  T
Q  211 caacagacttcctaccaaagacaatctttttcgtaggagggct 253  Q
    ||| |||||||||||||||||||||||||||||||||||||||    
T  3250685 caatagacttcctaccaaagacaatctttttcgtaggagggct 3250643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 33035707 - 33035669
Alignment:
Q  69 atcctattaacggttactccgttaaggggacttatcagt 107  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  33035707 atcctattaatggttattccgttaaggggacttatcagt 33035669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 21829834 - 21829902
Alignment:
Q  68 gatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttacacatcaatggag 136  Q
    ||||||||||| ||||| ||||||||||| |||||||||| ||| ||  | ||  ||||||||||||||    
T  21829834 gatcctattaatggttattccgttaagggtacttatcagtatcttacgatgcccgacacatcaatggag 21829902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 68 - 253
Target Start/End: Complemental strand, 18005085 - 18004900
Alignment:
Q  68 gatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagt 167  Q
    |||||||||||||||||| |||||||||||||||||||| |||| || ||  || ||||||||| ||||| |||||||||||||||||| ||| |||||     
T  18005085 gatcctattaacggttacaccgttaaggggacttatcagcttcttacgctaactgacacatcaacggagcttggtctttatgatgcagcgtggttgaagc 18004986  T
Q  168 aggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttcctaccaaagacaatctttttcgtaggagggct 253  Q
    ||||| |  |||||||| ||||||||||||||| | |||||  ||| ||||| |||||||||||||||||| ||||||||||||||    
T  18004985 aggttccattaaaggtttttatatttgtttggctgcttctccacaatagactccctaccaaagacaatcttcttcgtaggagggct 18004900  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 30265373 - 30265440
Alignment:
Q  256 tacacataattataaggaatgaatttgtcccaaatggt----ataagcaatttattggttttggaata 319  Q
    |||||||||||||||||||||| ||||||| |||||||    |||||||||||||||||||| |||||    
T  30265373 tacacataattataaggaatgagtttgtccgaaatggttggcataagcaatttattggttttagaata 30265440  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 6743947 - 6744048
Alignment:
Q  148 tgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttcctaccaaagacaatctttttcgtagg 247  Q
    ||||| ||||||||||||| ||||| || ||||||||   |||||||||||| || | ||  |||||||| | |||||||||||||||||| | ||||||    
T  6743947 tgatgtagcatggctgaagcaggttccgttaaaggtttcaatatttgtttggaggctccttcgcaacagattacctaccaaagacaatcttatccgtagg 6744046  T
Q  248 ag 249  Q
    ||    
T  6744047 ag 6744048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 6654209 - 6654310
Alignment:
Q  148 tgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttcctaccaaagacaatctttttcgtagg 247  Q
    ||||| ||||||||||||| ||||| || ||||||||   |||||||||||| || | ||  | |||||| | |||||||||||||||||| | ||||||    
T  6654209 tgatgtagcatggctgaagcaggttccgttaaaggtttcaatatttgtttggaggctccttcgtaacagattacctaccaaagacaatcttatccgtagg 6654308  T
Q  248 ag 249  Q
    ||    
T  6654309 ag 6654310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 6734611 - 6734712
Alignment:
Q  148 tgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttcctaccaaagacaatctttttcgtagg 247  Q
    ||||| ||||||||||||| ||||| || ||||||||   |||||||||||| || | ||  | |||||| | |||||||||||||||||| | ||||||    
T  6734611 tgatgtagcatggctgaagcaggttccgttaaaggtttcaatatttgtttggaggctccttcgtaacagattacctaccaaagacaatcttatccgtagg 6734710  T
Q  248 ag 249  Q
    ||    
T  6734711 ag 6734712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 4693465 - 4693709
Alignment:
Q  9 ccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtt 108  Q
    |||||||||||  || |||||||||||||||||||| |||||  ||||| ||||| |||||||||||||||| |||||| |||||||| ||||||||||     
T  4693465 ccttgttgtgtaatattgttttgcaggatcatgttcatgacaggtggcggtgagttttggatcctattaacgattactcggttaagggaacttatcagta 4693564  T
Q  109 tctaacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctc 208  Q
    ||| || |  ||| |||||||  |||||||| ||||||| || |  |  ||||||||| ||||| || |||||||    ||||||||||||||| |||||    
T  4693565 tctcacgcaacctgacacatctgtggagcgtagtctttacgacgttgtgtggctgaaggaggttccgttaaaggtatcaatatttgtttggcggcttctc 4693664  T
Q  209 tgcaacagacttcctaccaaagacaatctttttcgtaggagggct 253  Q
     |||||||||||||||||||||| |||||| | ||||||||||||    
T  4693665 cgcaacagacttcctaccaaagataatcttatccgtaggagggct 4693709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 42910669 - 42910904
Alignment:
Q  11 ttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtttc 110  Q
    |||||||||  || |||||||||||| ||||||||||| |  ||||| |  || |||||||||||||| |||||||| ||||||||||||||||||| ||    
T  42910669 ttgttgtgtaatattgttttgcaggaccatgttcttgataggtggcggttggttttggatcctattaatggttactcagttaaggggacttatcagtatc 42910768  T
Q  111 taacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctg 210  Q
    | || |   || ||||||   ||||||| |||||||  |||||||  ||||||||| ||| | || |||||||    |||||||| ||| || || || |    
T  42910769 tcacgcgagctgacacatttgtggagcgcggtcttttcgatgcagtgtggctgaagcaggctccgttaaaggtctcaatatttgtgtggaggcttttccg 42910868  T
Q  211 caacagacttcctaccaaagacaatctttttcgtag 246  Q
     ||||||||||||||||||||||||||| |||||||    
T  42910869 taacagacttcctaccaaagacaatcttattcgtag 42910904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 43913590 - 43913350
Alignment:
Q  9 ccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtt 108  Q
    |||||||||||  || |||||||||||||||||||| |||||  ||||| |  || ||||| | |||||| |||||||| ||||| ||||||||||| |     
T  43913590 ccttgttgtgtaatattgttttgcaggatcatgttcatgacaggtggcggttggttttggagcatattaatggttactcagttaaagggacttatcaata 43913491  T
Q  109 tctaacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgtta-tatttgtttggcggtttct 207  Q
    ||| || |  ||| | |||||  ||||||| ||| |||| || || |  ||||||||| || ||  | |||||| ||| | |||| ||||| ||| ||||    
T  43913490 tctcacgcgacctgatacatccgtggagcgcggtatttacgacgctgtgtggctgaagcagtttctgttaaagg-tgtcactattcgtttgacggcttct 43913392  T
Q  208 ctgcaacagacttcctaccaaagacaatctttttcgtaggag 249  Q
    | |||||||||||||||||||| | |||||| | ||||||||    
T  43913391 ccgcaacagacttcctaccaaatataatcttatccgtaggag 43913350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 15175245 - 15175284
Alignment:
Q  68 gatcctattaacggttactccgttaaggggacttatcagt 107  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  15175245 gatcctattagcggttactccgttaaggagacttatcagt 15175284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 34149133 - 34148931
Alignment:
Q  25 tgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttac 124  Q
    |||||||||||||||||||| |||||  ||||| || || ||||||||||| ||||||||||| || ||| |||||||||||| ||| || |  | | |     
T  34149133 tgttttgcaggatcatgttcatgacacgtggcggtgggttttggatcctatcaacggttactcagtcaagaggacttatcagtatctcacgcgacatgat 34149034  T
Q  125 acatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttccta 224  Q
    ||||| |||||||| |||||||| || |  |   |||||||| ||||| || |||||||    ||||||||||||||| ||||| |||||||||||||||    
T  34149033 acatctatggagcgcggtctttacgacgttgtgaggctgaagcaggttccgttaaaggtatcaatatttgtttggcggcttctccgcaacagacttccta 34148934  T
Q  225 cca 227  Q
    |||    
T  34148933 cca 34148931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 34177991 - 34178193
Alignment:
Q  25 tgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttac 124  Q
    |||||||||||||||||||| |||||  ||||| || || ||||||||||| ||||||||||| || ||| |||||||||||| ||| || |  | | |     
T  34177991 tgttttgcaggatcatgttcatgacacgtggcggtgggttttggatcctatcaacggttactcagtcaagaggacttatcagtatctcacgcgacatgat 34178090  T
Q  125 acatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttccta 224  Q
    ||||| |||||||| |||||||| || |  |   |||||||| ||||| || |||||||    ||||||||||||||| ||||| |||||||||||||||    
T  34178091 acatctatggagcgcggtctttacgacgttgtgaggctgaagcaggttccgttaaaggtatcaatatttgtttggcggcttctccgcaacagacttccta 34178190  T
Q  225 cca 227  Q
    |||    
T  34178191 cca 34178193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 249
Target Start/End: Original strand, 38432277 - 38432501
Alignment:
Q  25 tgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttac 124  Q
    |||||||||| | |||||||||||||  ||| | || ||  ||||||||||||||||||| | ||||||||||  ||| |||| ||| ||  |  || ||    
T  38432277 tgttttgcagaaccatgttcttgacaggtggtgttgggttatggatcctattaacggttatttcgttaagggggtttaccagtatctcacgttatctgac 38432376  T
Q  125 acatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttccta 224  Q
    || ||  ||||||| ||  ||| ||||| ||||||||||||| ||| | || ||||||||   |||||||||||| || | ||  |||||||||| ||||    
T  38432377 acctctctggagcgaggcttttttgatgtagcatggctgaagcagggtccgttaaaggtttcaatatttgtttggaggatccttcgcaacagactaccta 38432476  T
Q  225 ccaaagacaatctttttcgtaggag 249  Q
    |||||| ||||||| | ||||||||    
T  38432477 ccaaaggcaatcttatccgtaggag 38432501  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 34148913 - 34148852
Alignment:
Q  188 atatttgtttggcggtttctctgcaacagacttcctaccaaagacaatctttttcgtaggag 249  Q
    ||||||||||||||| |||||  |||||| |||||||||||||| |||||| ||||||||||    
T  34148913 atatttgtttggcggcttctccacaacagtcttcctaccaaagataatcttattcgtaggag 34148852  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 34178211 - 34178272
Alignment:
Q  188 atatttgtttggcggtttctctgcaacagacttcctaccaaagacaatctttttcgtaggag 249  Q
    ||||||||||||||| |||||  |||||| |||||||||||||| |||||| ||||||||||    
T  34178211 atatttgtttggcggcttctccacaacagtcttcctaccaaagataatcttattcgtaggag 34178272  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 923506 - 923551
Alignment:
Q  204 ttctctgcaacagacttcctaccaaagacaatctttttcgtaggag 249  Q
    ||||| ||||||||||||| ||||||||||||||| ||||| ||||    
T  923506 ttctccgcaacagacttccaaccaaagacaatcttcttcgtcggag 923551  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 249
Target Start/End: Original strand, 17403163 - 17403386
Alignment:
Q  26 gttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttaca 125  Q
    ||||||||||||||||||| |||||  ||||| |  || |||||||||| ||| |||||||  ||||||||||||| ||||| ||| || |   |  |||    
T  17403163 gttttgcaggatcatgttcatgacaggtggcggttggttttggatcctactaatggttacttagttaaggggacttgtcagtatctcacgcgatccgaca 17403262  T
Q  126 catcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttcctac 225  Q
    ||||  ||||| | ||||| ||||||||||  ||| ||||| ||| | || |||| ||    ||||||||||||||| || || ||||||||||||||||    
T  17403263 catctgtggagtgcggtctctatgatgcagtgtgggtgaagcaggctccgttaaaagtctcaatatttgtttggcggcttttccgcaacagacttcctac 17403362  T
Q  226 caaagacaatctttttcgtaggag 249  Q
    ||||||||||||| | ||||||||    
T  17403363 caaagacaatcttatccgtaggag 17403386  T

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Target: scaffold1243 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1243
Description:

Target: scaffold1243; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 1345 - 1443
Alignment:
Q  9 ccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagt 107  Q
    |||||||||||  || | |||||||||||||||||||||| |  ||||| ||  |  | ||||||||||||||||||||||||||||||||||||||||    
T  1345 ccttgttgtgtcatattattttgcaggatcatgttcttgataggtggcggtggattcttgatcctattaacggttactccgttaaggggacttatcagt 1443  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 15160917 - 15160837
Alignment:
Q  27 ttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagt 107  Q
    |||||||||||||||||||||| |  ||||| ||  |  | |||||||||||| |||||||||||||||||||||||||||    
T  15160917 ttttgcaggatcatgttcttgataggtggcggtggattcttgatcctattaactgttactccgttaaggggacttatcagt 15160837  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 15472486 - 15472582
Alignment:
Q  9 ccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatca 105  Q
    |||||||||||  || | |||||||||||||||||||||| |  ||||| ||| | ||  ||| ||||||| ||||||| |||||||||||||||||    
T  15472486 ccttgttgtgtcatattattttgcaggatcatgttcttgataggtggcggtgaattttttatcatattaactgttactctgttaaggggacttatca 15472582  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 15184465 - 15184426
Alignment:
Q  68 gatcctattaacggttactccgttaaggggacttatcagt 107  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  15184465 gatcctattaacggttactccattaaggggacttatcagt 15184426  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 18093169 - 18093218
Alignment:
Q  188 atatttgtttggcggtttctctgcaacagacttcctaccaaagacaatct 237  Q
    |||||||| ||||||||| || |||||||||| |||||||||||||||||    
T  18093169 atatttgtgtggcggtttttccgcaacagactccctaccaaagacaatct 18093218  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 6217844 - 6217939
Alignment:
Q  154 agcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttcctaccaaagacaatctttttcgtaggag 249  Q
    |||||||||||||||||||    ||||||||   |||||||||||| || | ||  |||| ||||| |||||||||||||||||| | ||||||||    
T  6217844 agcatggctgaagtaggttctattaaaggtttcaatatttgtttggaggctccttcgcaatagactacctaccaaagacaatcttatccgtaggag 6217939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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