View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12543_high_5 (Length: 323)
Name: NF12543_high_5
Description: NF12543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12543_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 34658405 - 34658720
Alignment:
| Q |
1 |
cgtgattccaaccggattatttgtgaatttacggacgattgggacgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34658405 |
cgtgattccaaccggattatttgtgaatttacggacgattgggatgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaact |
34658504 |
T |
|
| Q |
101 |
gacatgttggctggtgaaatttgaaatgtgggagaggggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34658505 |
gacatgttggctggtgaaatttgaaatgtgtgagagaggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgaggcagcta |
34658604 |
T |
|
| Q |
201 |
taagtaaaattcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggctaatttccaaaagtttgatggtgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34658605 |
taagtaaaattcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggctaatttccaaaagtttgatggtgc |
34658704 |
T |
|
| Q |
301 |
atttggttctgtgctc |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34658705 |
atttggttctgtgctc |
34658720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 293
Target Start/End: Original strand, 34665079 - 34665370
Alignment:
| Q |
2 |
gtgattccaaccggattatttgtgaatttacggacgattgggacgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactg |
101 |
Q |
| |
|
||||||||| | ||||| ||||||||| |||||| || ||| ||||||| |||||| || ||||| || |||| ||||||||||| || ||||||| || |
|
|
| T |
34665079 |
gtgattccagcaggattctttgtgaatctacggatgaatggaacgaataagcgttcgtatagaataacacctgtcatcatggttagcacgctgaaaattg |
34665178 |
T |
|
| Q |
102 |
acatgttggctggtgaaatttgaaatgtgggagaggggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagctat |
201 |
Q |
| |
|
||| |||| |||||||||| |||||| ||||| ||||||| |||||||| ||||||||| | || || |||||| | | || ||| |||| ||| |
|
|
| T |
34665179 |
ccatactggccggtgaaatttcgaatgtgtgagagaggtgacgatccattgtacgagcttgtacaatcacaaaactatgttgagatgatgatgcagttat |
34665278 |
T |
|
| Q |
202 |
aagtaaaattcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggctaatttccaaaagtttg |
293 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||| | | | |||||||||| ||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
34665279 |
gagtagaattcctgatgcccaaattggaagcattctaaccaggcattttaactcttcaactctatggacagtggctaagttccataagtttg |
34665370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 305
Target Start/End: Original strand, 34645379 - 34645682
Alignment:
| Q |
2 |
gtgattccaaccggattatttgtgaatttacggacgattgggacgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactg |
101 |
Q |
| |
|
||||||||| | ||||| ||||||||| ||||| ||| ||| ||||| | ||||||||| || || |||||| ||||||||||| |||| |||| || |
|
|
| T |
34645379 |
gtgattccagcaggattctttgtgaatctacgggcgaatggaacgaaaaagcgttcatatagcataactcctatcatcatggttaggacaccaaaaattg |
34645478 |
T |
|
| Q |
102 |
acatgttggctggtgaaatttgaaatgtgggagaggggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagctat |
201 |
Q |
| |
|
|||| |||||||||| |||||| |||| ||| | ||||||||||||| | |||||||||| ||||| |||||| | |||| ||| | ||| |
|
|
| T |
34645479 |
acatattggctggtgcaatttggaatgaatgagtgaggtgacggtccatcgaacgagcttgttgaatgacaaaactacctaaatgtgatgaagacattat |
34645578 |
T |
|
| Q |
202 |
aagtaaaattcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggctaatttccaaaagtttgatggtgca |
301 |
Q |
| |
|
|| ||||||||||| || |||||||||| ||||||||||| | ||| | ||||||||||||||||||||| |||| ||||||| ||||| ||||||| |
|
|
| T |
34645579 |
gagcaaaattcctgaagcccaaattggaagcattctgatgatagctttcagttcctcaactctatggacagtgactaaattccaaaggtttggtggtgca |
34645678 |
T |
|
| Q |
302 |
tttg |
305 |
Q |
| |
|
|||| |
|
|
| T |
34645679 |
tttg |
34645682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University