View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12543_low_2 (Length: 208)
Name: NF12543_low_2
Description: NF12543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12543_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 4932476 - 4932304
Alignment:
| Q |
17 |
caatggaacctcctagtccaaaatctgaaaaaccaccaaagaattggtttagacgttggtgttgttgttcctgcatgtcaggttcaccttgttactaata |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4932476 |
caatggaacctcctaatccaaaatctgaaaaaccaccaaagaattggtttagacgttggtgttgttgttcctgcttgtcaggttcaccttgttactaata |
4932377 |
T |
|
| Q |
117 |
aaaggtcttgaaatggtgttgaaaaagaaattatcaagtgacaatgcctctcaattataatgtttgcctaatc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
4932376 |
aaaggtcttgaaatggtgttgaaaaagaaattatcaagtgacaatgcgtctcaattataatgtctgcctaatc |
4932304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University