View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12544_low_1 (Length: 508)
Name: NF12544_low_1
Description: NF12544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12544_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 20 - 494
Target Start/End: Original strand, 2482772 - 2483246
Alignment:
| Q |
20 |
aatccaacatgagaattacgtcacaattgatgaaaatgaaccaagttattcttatcatagacaaaattttatttttgaaaagaaaaatatcctacaaaat |
119 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2482772 |
aatccaccatgagaattacgtcacaattgatgaaaatgaatcaagttattcttatcatagacacaattttatttttgaaaagaaaaatatcctacaaaat |
2482871 |
T |
|
| Q |
120 |
tagtacattttcttgtttaaaaatctgtataaatacaacactagaatcccaacaattagcaatccgaaagtaattgctacatacaaagaaccaaaatgtg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2482872 |
tagtacattttcttgtttaaaaatctgtataaatacaacactagaatcccaacaattagcaatccgaaagtaattgctacatacaaagaaccaaaatgtg |
2482971 |
T |
|
| Q |
220 |
ttcattttctctatggtttgttttaggattaatattcattgtgggtagtcacgttgcacaagccaaagactctccagcaaactatgtgaaggctcacaac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2482972 |
ttcattttctctatggtttgttttaggattaatattcattgtgggtagtcacgttgcacaagccaaagactctccagcaaactatgtgaaggctcacaac |
2483071 |
T |
|
| Q |
320 |
aaagcaagatctgcagttgattcatttattagaattccaaaaattgtttgggatnnnnnnnttgctgcttatgcacagaactatgctaatcaacgcaagg |
419 |
Q |
| |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2483072 |
aaagcaagatcggcagttgattcatttattaaaattccaaaaattgtttgggataaaaaaattgctgcttatgcacagaactatgctaatcaacgcaagg |
2483171 |
T |
|
| Q |
420 |
attgtaaaccgatcccctctgatagtggtggccgttacggcgagaatattgcggtgagcaccggacacatcagtg |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2483172 |
attgtaaaccgatcccctctgatagtggtggccgttacggtgagaatattgcggtgagcaccggacacatcagtg |
2483246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 205 - 480
Target Start/End: Original strand, 2478453 - 2478728
Alignment:
| Q |
205 |
aagaaccaaaatgtgttcattttctctatggtttgttttaggattaatattcattgtgggtagtcacgttgcacaagccaaagactctccagcaaactat |
304 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |||||| |||| |
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| T |
2478453 |
aagaaccaaaatgtgttcattttctctatggtttgttttgggattaatagtcattgtgggtagtcacgttgcacaagcacaagactcaccagcagactac |
2478552 |
T |
|
| Q |
305 |
gtgaaggctcacaacaaagcaagatctgcagttgattcatttattagaattccaaaaattgtttgggatnnnnnnnttgctgcttatgcacagaactatg |
404 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
2478553 |
gtgaatgctcacaacaaagcaagatctgcagttgattcattcattaaaattccaaacattgtttgggacaacgaagttgctgcttatgcacagaactatg |
2478652 |
T |
|
| Q |
405 |
ctaatcaacgcaaggattgtaaaccgatcccctctgatagtggtggccgttacggcgagaatattgcggtgagcac |
480 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| || ||||||| ||||| ||| ||||||||||||||||||| |
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| T |
2478653 |
ctaatcaacgcaaggattgtaaaccgataccctccaatggtggtggtcgttatggcaagaatattgcggtgagcac |
2478728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 205 - 483
Target Start/End: Original strand, 2470620 - 2470895
Alignment:
| Q |
205 |
aagaaccaaaatgtgttcattttctctatggtttgttttaggattaatattcattgtgggtagtcacgttgcacaagccaaagactctccagcaaactat |
304 |
Q |
| |
|
||||||||||||| ||||| ||||||||| || |||||| ||||||||| |||||||||| ||||| |||||| | || ||||||| |||||| ||||| |
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| T |
2470620 |
aagaaccaaaatgggttcactttctctattgtgtgttttgggattaatactcattgtgggcagtcaagttgcaatatcccaagactcaccagcagactat |
2470719 |
T |
|
| Q |
305 |
gtgaaggctcacaacaaagcaagatctgcagttgatt-catttattagaattccaaaaattgtttgggatnnnnnnnttgctgcttatgcacagaactat |
403 |
Q |
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||||| || ||||| |||||||| || ||||| | | || ||||||||| |||||||||||| ||||||||| ||||||||||||| |
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| T |
2470720 |
gtgaacgcccacaatgcagcaagatttg----tgattaccagtgctaaaattccaaatattgtttgggatgaaaaagttgctgcttttgcacagaactat |
2470815 |
T |
|
| Q |
404 |
gctaatcaacgcaaggattgtaaaccgatcccctctgatagtggtggccgttacggcgagaatattgcggtgagcaccgg |
483 |
Q |
| |
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|||||| |||||||||||||||||| |||||| || | |||||||||||||| |||||||||||||||||||||||||| |
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| T |
2470816 |
gctaataaacgcaaggattgtaaacagatcccttcaggcagtggtggccgttatggcgagaatattgcggtgagcaccgg |
2470895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 213 - 480
Target Start/End: Original strand, 2469598 - 2469865
Alignment:
| Q |
213 |
aaatgtgttcattttctctatggtttgttttaggattaatattcattgtgggtagtcacgttgcacaagccaaagactctccagcaaactatgtgaaggc |
312 |
Q |
| |
|
||||| ||||||||||||||| ||| | ||||| |||| | ||||| ||||||||||||||||||| ||| ||||||| |||||| |||| ||||| || |
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| T |
2469598 |
aaatgggttcattttctctattgttcctgttaggtttaacactcattatgggtagtcacgttgcacatgcccaagactcaccagcagactacgtgaacgc |
2469697 |
T |
|
| Q |
313 |
tcacaacaaagcaagatctgcagttgattcatttattagaattccaaaaattgtttgggatnnnnnnnttgctgcttatgcacagaactatgctaatcaa |
412 |
Q |
| |
|
||||| || |||||||| || ||| || || ||| ||||||||| ||||||||||| ||||||||| |||| | ||||||||||||||| |
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| T |
2469698 |
ccacaataatgcaagatcagcggttcatacaaacgttaaaattccaaatattgtttgggacaacaaagttgctgcttttgcaaaaaactatgctaatcaa |
2469797 |
T |
|
| Q |
413 |
cgcaaggattgtaaaccgatcccctctgatagtggtggccgttacggcgagaatattgcggtgagcac |
480 |
Q |
| |
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|||||||||||| ||| | ||| ||||| | |||||||||||||||| |||||||| |||| |||||| |
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| T |
2469798 |
cgcaaggattgtcaactggtccactctggtggtggtggccgttacggagagaatatcgcggagagcac |
2469865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 424
Target Start/End: Original strand, 2473927 - 2474086
Alignment:
| Q |
265 |
tagtcacgttgcacaagccaaagactctccagcaaactatgtgaaggctcacaacaaagcaagatctgcagttgattcatttattagaattccaaaaatt |
364 |
Q |
| |
|
||||||||||||||| ||| ||||||| |||||| |||| ||||| || |||||| |||||||||| ||||||||| || ||||| ||||||||| ||| |
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| T |
2473927 |
tagtcacgttgcacatgcccaagactcaccagcagactacgtgaatgcccacaaccaagcaagatcggcagttgatacaaatattaaaattccaaacatt |
2474026 |
T |
|
| Q |
365 |
gtttgggatnnnnnnnttgctgcttatgcacagaactatgctaatcaacgcaaggattgt |
424 |
Q |
| |
|
||||||| |||||||||||||||| || |||||||||||||||||||||||| |
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| T |
2474027 |
atttgggacaacaaagttgctgcttatgcacaaaattatgctaatcaacgcaaggattgt |
2474086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 242 - 456
Target Start/End: Original strand, 2486163 - 2486374
Alignment:
| Q |
242 |
ttaggattaatattcattgtgggtagtcacgttgcacaagccaaagactctccagcaaactatgtgaaggctcacaacaaagcaagatctgcagttgatt |
341 |
Q |
| |
|
||||| |||| | ||||| |||||||||||||||| || ||| ||||||| || ||| |||| ||||| || ||||||||||||||||| || || |
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| T |
2486163 |
ttaggtttaacactcattatgggtagtcacgttgctcatgcccaagactcaccggcagactacgtgaacgcccacaacaaagcaagatcagccattacca |
2486262 |
T |
|
| Q |
342 |
catttattagaattccaaaaattgtttgggatnnnnnnnttgctgcttatgcacagaactatgctaatcaacgcaaggattgtaaaccgatcccctctga |
441 |
Q |
| |
|
| |||| ||||||||| |||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
2486263 |
cc---attaaaattccaaacattgtttgggataacgatattgctgcatttgcacagaactatgctaatcaacgcaaggattgtaaacagatcccctcagg |
2486359 |
T |
|
| Q |
442 |
tagtggtggccgtta |
456 |
Q |
| |
|
|||||||||||||| |
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|
| T |
2486360 |
cagtggtggccgtta |
2486374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 2485924 - 2486074
Alignment:
| Q |
20 |
aatccaacatgagaattacgtcacaattgatgaaaatgaaccaagttattcttatcatagacaaaattttatttttgaaaagaaaaatatcctacaaaat |
119 |
Q |
| |
|
|||||| |||||||||||||| | |||||||||||||||| ||| | | |||||||||| ||||| |||||||||| || |||| | ||| ||| |
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|
| T |
2485924 |
aatccaccatgagaattacgttaaaattgatgaaaatgaa----gttttcccgatcatagacacaatttcctttttgaaaataataataacatactcaat |
2486019 |
T |
|
| Q |
120 |
tagtacattttcttgtttaaaaatctgtataaatacaacactagaatcccaacaa |
174 |
Q |
| |
|
|| ||||||||| |||||| || |||||||||||||| ||||||| |||||||| |
|
|
| T |
2486020 |
tactacattttcatgtttacaagtctgtataaatacatcactagagccccaacaa |
2486074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 2466342 - 2466407
Alignment:
| Q |
267 |
gtcacgttgcacaagccaaagactctccagcaaactatgtgaaggctcacaacaaagcaagatctg |
332 |
Q |
| |
|
|||| |||||||| ||| ||||||| | |||| |||||||||| ||||||||| |||||||||||| |
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|
| T |
2466342 |
gtcatgttgcacatgcccaagactcacaagcagactatgtgaacgctcacaacgaagcaagatctg |
2466407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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