View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12544_low_2 (Length: 476)
Name: NF12544_low_2
Description: NF12544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12544_low_2 |
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| [»] scaffold0830 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 301 - 453
Target Start/End: Original strand, 5100052 - 5100204
Alignment:
| Q |
301 |
tgatatgtgatgttaggtgcaataccaatggagattggccatctcaatcaacttcagcttctacaaatgggatataacagcttgagtggacctattcctt |
400 |
Q |
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|||||| |||| |||||| | ||||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
5100052 |
tgatatttgattttaggttcgataccaatggagattggccatctcagtcaacttcaacttctactaatgggaaataacagcttgagtggacctattcctt |
5100151 |
T |
|
| Q |
401 |
caaaagtcttcaacatttcaacattggaaattttgagtcttgaactaaattct |
453 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| | ||||||| |
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| T |
5100152 |
caaaagtcttcaacatttcaacattggaaattttgtatcttgatcaaaattct |
5100204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 301 - 456
Target Start/End: Original strand, 5117611 - 5117766
Alignment:
| Q |
301 |
tgatatgtgatgttaggtgcaataccaatggagattggccatctcaatcaacttcagcttctacaaatgggatataacagcttgagtggacctattcctt |
400 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |||||||||| |
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| T |
5117611 |
tgatatgtgatgttaggttcaataccaaaggagattggccatctcaatcaacttcagcttctatttatgaaaaataacagcttgagtgggcctattcctt |
5117710 |
T |
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| Q |
401 |
caaaagtcttcaacatttcaacattggaaattttgagtcttgaactaaattctttc |
456 |
Q |
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| T |
5117711 |
cacaagtcttcaacatttcaacattgaaatatttgcgtcttgaactaaattctttc |
5117766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 301 - 456
Target Start/End: Complemental strand, 5081934 - 5081779
Alignment:
| Q |
301 |
tgatatgtgatgttaggtgcaataccaatggagattggccatctcaatcaacttcagcttctacaaatgggatataacagcttgagtggacctattcctt |
400 |
Q |
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| T |
5081934 |
tgatatgtgattttaggttcgataccaatggagattggcagtctcaatcaacttcagcttctacaaatgggaaataacagcttgagcggacctattcctt |
5081835 |
T |
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| Q |
401 |
caaaagtcttcaacatttcaacattggaaattttgagtcttgaactaaattctttc |
456 |
Q |
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||| ||||||||||||||||||||||| |||| |||||||| |||||||||| |
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| T |
5081834 |
tgaaaatcttcaacatttcaacattggaatatttgcatcttgaacaaaattctttc |
5081779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 5082492 - 5082327
Alignment:
| Q |
25 |
gtaacaatttaaatggaactcttccagatgagatgtgtaatcaacttcctcaacttgaattgttttttctatacaataattttcttgaaggaaccattcc |
124 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||| |||| | |||| | | |||||| ||||||| |
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| T |
5082492 |
gtaacaatttaaatggaactcttccagacgagatgtgtcatcaacttcctcaacttgaaatatttactctactcggtaatcatttagaaggagccattcc |
5082393 |
T |
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| Q |
125 |
acgatcgattggcaattgcacatcgttacaaaagttatatttacaaaataacctttttacaggtat |
190 |
Q |
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| T |
5082392 |
acgatcgattggcaactgcacattgttacaaacgttaactttacaggataactttttttcaggtat |
5082327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 27 - 285
Target Start/End: Original strand, 5099760 - 5100023
Alignment:
| Q |
27 |
aacaatttaaatggaactcttccagatgagatgtgtaatcaacttcctcaacttgaattgttttttctatacaataattttcttgaaggaaccattccac |
126 |
Q |
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|||||||||||||||| ||| ||||| ||||||||| |||||||||||||||| |||| |||| |||| | | |||| | |||||||| |||||||| |
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| T |
5099760 |
aacaatttaaatggaagtctcccagacgagatgtgtcttcaacttcctcaactttaattattttctctaaaaagtaatcattttgaaggattcattccac |
5099859 |
T |
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| Q |
127 |
gatcgattggcaattgcacatcgttacaaaagttatatttacaaaataacctttttacaggtat-------ttccttaactttctatcttcactttatac |
219 |
Q |
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||||||||| || || ||||| ||||||| |||| ||||||| |||||| ||||||||||||| |||||||||||||||| || |||||| |
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| T |
5099860 |
catcgattggaaactgtacatcattacaaacgttacatttacagaataacttttttacaggtataccgtacacccttaactttctatctacatgttatac |
5099959 |
T |
|
| Q |
220 |
tttaaattgattgtttttacaattttaatattactagtatttgtgtttacaccacgcttcatcatc |
285 |
Q |
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||| | || | ||||||| ||||| ||||| |||||||||| ||||||||| ||||||||||| |
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| T |
5099960 |
ttttagttaa--gtttttaaaatttctgtattattagtatttgtttttacaccaagcttcatcatc |
5100023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 5117465 - 5117534
Alignment:
| Q |
121 |
ttccacgatcgattggcaattgcacatcgttacaaaagttatatttacaaaataacctttttacaggtat |
190 |
Q |
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| T |
5117465 |
ttccacgatcgattggcaactgcacatttttacaaaagttatatttcactaataacttttttacaggtat |
5117534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 5117436 - 5117469
Alignment:
| Q |
17 |
ccttggtagtaacaatttaaatggaactcttcca |
50 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
5117436 |
ccttcgtagtaacaatttaaatggaactcttcca |
5117469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 301 - 456
Target Start/End: Complemental strand, 14414239 - 14414084
Alignment:
| Q |
301 |
tgatatgtgatgttaggtgcaataccaatggagattggccatctcaatcaacttcagcttctacaaatgggatataacagcttgagtggacctattcctt |
400 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||||||||| |
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| T |
14414239 |
tgatatgtgatgttaggttcgttaccaatggagattggccatctcaatcaacttcagattctacaaatgtggaataacaacttgagtggacctattcctt |
14414140 |
T |
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| Q |
401 |
caaaagtcttcaacatttcaacattggaaattttgagtcttgaactaaattctttc |
456 |
Q |
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||||| |||||||||||||||||||||||| |||| ||||| || |||||||||| |
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| T |
14414139 |
caaaactcttcaacatttcaacattggaaaatttgtttcttggacaaaattctttc |
14414084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 25 - 199
Target Start/End: Complemental strand, 14414474 - 14414300
Alignment:
| Q |
25 |
gtaacaatttaaatggaactcttccagatgagatgtgtaatcaacttcctcaacttgaattgttttttctatacaataattttcttgaaggaaccattcc |
124 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| || || || ||| ||||||||| |||||||||||||||||| |
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| T |
14414474 |
gtaacaatttaaatggaattcttccacatgagacgtgtaatcaacttcctcaacttaaaagtttcttcctacacaataattatcttgaaggaaccattcc |
14414375 |
T |
|
| Q |
125 |
acgatcgattggcaattgcacatcgttacaaaagttatatttacaaaataacctttttacaggtatttccttaac |
199 |
Q |
| |
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|||||| |||||||| ||||||||||||||| ||||||||||| | |||||| ||||||||||||| ||||||| |
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| T |
14414374 |
acgatcaattggcaactgcacatcgttacaagagttatatttatataataacttttttacaggtatacccttaac |
14414300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 322 - 453
Target Start/End: Original strand, 16884342 - 16884473
Alignment:
| Q |
322 |
ataccaatggagattggccatctcaatcaacttcagcttctacaaatgggatataacagcttgagtggacctattccttcaaaagtcttcaacatttcaa |
421 |
Q |
| |
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||||| |||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||| | ||||||| ||| ||||||||||||||| |
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| T |
16884342 |
atacctatggagattggcaatctcaatcaaattcaggttctacaaatgggaaataacagcttgagtggacatgttccttctaaactcttcaacatttcaa |
16884441 |
T |
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| Q |
422 |
cattggaaattttgagtcttgaactaaattct |
453 |
Q |
| |
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|||||||| |||| |||||| ||||||||| |
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| T |
16884442 |
cattggaacatttgcatcttgagctaaattct |
16884473 |
T |
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Back To:
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Target: scaffold0830 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 1270 - 1395
Alignment:
| Q |
26 |
taacaatttaaatggaactcttccagatgagatgtgtaatcaacttcctcaacttgaattgttttttctatacaataattttcttgaaggaaccattcca |
125 |
Q |
| |
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||||||||||||||||| ||| ||| |||| | | ||||| ||||||||||||||| |||| | || |||| ||| | ||||||||| ||||||| |
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| T |
1270 |
taacaatttaaatggaagtctaccaaatgattttttcaatcatcttcctcaacttgaagatttttctttagacaacaatcattttgaaggaagcattcca |
1369 |
T |
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| Q |
126 |
cgatcgattggcaattgcacatcgtt |
151 |
Q |
| |
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||||| |||||||| | ||||||||| |
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| T |
1370 |
cgatcaattggcaactccacatcgtt |
1395 |
T |
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