View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12544_low_3 (Length: 324)
Name: NF12544_low_3
Description: NF12544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12544_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 37 - 236
Target Start/End: Complemental strand, 24273491 - 24273292
Alignment:
| Q |
37 |
gtttactactaacccaatagtctaactatccaaaaaagtgtcactacagttatgtcgtcgttctctactttgaagagcatacctaacttcttccagaaac |
136 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24273491 |
gtttactactaacccaatagtctaactatccaagatagtgtcactacagttatgtcgtcgttctctactttgaagagcatacctaacttcttccagaaac |
24273392 |
T |
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| Q |
137 |
aaagaatctttaccactaatgaaagactccctaaagttctcatatgacaatggtaatgaaactaacagaatcaaggcggcttcctcttcatcaatcttag |
236 |
Q |
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| T |
24273391 |
aatgaatctttaccactaatgaaagactccctaaagttctcatatgacaatcgtaatgaaactaacaaaatcaaggcagcttcctcttcatcaatcttag |
24273292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 24273086 - 24273003
Alignment:
| Q |
231 |
tcttagtatgaacattacgccgatctaataatattgaattcaattgatctagatgttctttccaacaaatacgttccagtgaac |
314 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||| |
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| T |
24273086 |
tcttagtatgaacattacatcgatctaataatattgaattcaattgttctagatgttctttccaggaaataccttccagtgaac |
24273003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 64 - 289
Target Start/End: Original strand, 20289372 - 20289597
Alignment:
| Q |
64 |
atccaaaaaagtgtcactacagttatgtcgtcgttctctactttgaagagcatacctaacttcttccagaaacaaagaatctttaccactaatgaaagac |
163 |
Q |
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|||||||| |||| || |||| ||||||| ||||||| | ||||| ||||||||||||||||||| | ||| |||| ||||||||||||||||||| |
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| T |
20289372 |
atccaaaacagtgccattacaactatgtcgcaattctctaatatgaagggcatacctaacttcttccacatacagtgaatttttaccactaatgaaagac |
20289471 |
T |
|
| Q |
164 |
tccctaaagttctcatatgacaatggtaatgaaactaacagaatcaaggcggcttcctcttcatcaatcttagtatgaacattacgccgatctaataata |
263 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||||| |||||||||||| ||| || |||| || |||| ||||||| |
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| T |
20289472 |
tccctaaagttctcataggacaatggtaaagaaactaacagaatcaaggcaacatcctcatcatcaatcttaatatcaatattatgcagatcaaataata |
20289571 |
T |
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| Q |
264 |
ttgaattcaattgatctagatgttct |
289 |
Q |
| |
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| |||||||||||||||||||||||| |
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| T |
20289572 |
tcgaattcaattgatctagatgttct |
20289597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 64 - 289
Target Start/End: Original strand, 53471765 - 53471990
Alignment:
| Q |
64 |
atccaaaaaagtgtcactacagttatgtcgtcgttctctactttgaagagcatacctaacttcttccagaaacaaagaatctttaccactaatgaaagac |
163 |
Q |
| |
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|||| ||| |||||||||||| ||||||| | |||||||| |||| || ||||||||||||||||| | | |||| ||| |||||||||||||| |
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| T |
53471765 |
atcctaaatagtgtcactacaactatgtcgcagatctctactgtgaatgtcagacctaacttcttccagagaatatgaattgttaacactaatgaaagac |
53471864 |
T |
|
| Q |
164 |
tccctaaagttctcatatgacaatggtaatgaaactaacagaatcaaggcggcttcctcttcatcaatcttagtatgaacattacgccgatctaataata |
263 |
Q |
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||| |||| |||||||||||||||||||| |||||||||||||||||| | | ||||| |||||||||||| ||| || ||||||| ||| |||||||| |
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| T |
53471865 |
tccataaatttctcatatgacaatggtaaagaaactaacagaatcaagacaacatcctcatcatcaatcttaatataaatattacgcagatataataata |
53471964 |
T |
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| Q |
264 |
ttgaattcaattgatctagatgttct |
289 |
Q |
| |
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|||||||||| ||||||||||||||| |
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| T |
53471965 |
ttgaattcaactgatctagatgttct |
53471990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 286
Target Start/End: Original strand, 9009623 - 9009874
Alignment:
| Q |
37 |
gtttactactaacccaatagtctaactatccaaaaaagtgtcactacagttatgtcgtcgttctctactttgaagagcatacctaacttcttccagaaac |
136 |
Q |
| |
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|||| |||||| ||||||| ||||| |||| ||| |||| ||| |||| |||||| ||||||| | ||||| ||| ||||||||||||||||| || |
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| T |
9009623 |
gtttgctactaggccaatagcctaaccatccgaaacagtgccacgacagatatgtcacaattctctattgtgaagggcagacctaacttcttccagagac |
9009722 |
T |
|
| Q |
137 |
aaagaatcttt-accactaatgaaagactccctaaagttctcatatgacaatggt-aatgaaactaacagaatcaaggcggcttcctcttcatcaatctt |
234 |
Q |
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|| ||| |||| | | ||||||||||||||||||||||||||||| |||||| || || ||||||||| |||||||| || || |||||||| || |
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| T |
9009723 |
aatgaaacttttaacgctaatgaaagactccctaaagttctcataagacaatagtaaaaaaaactaacataatcaaggtactatcatcgtcatcaatttt |
9009822 |
T |
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| Q |
235 |
agtatgaacattacgccgatctaataatattgaattcaattgatctagatgt |
286 |
Q |
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| ||| || ||||||| |||||||| ||| |||| || ||||||| ||||| |
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| T |
9009823 |
aatatcaatattacgcagatctaatcatagtgaaatctcttgatctggatgt |
9009874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 13419435 - 13419574
Alignment:
| Q |
73 |
agtgtcactacagttatgtcgtcgttctctactttgaagagcatacctaacttcttccagaaacaaagaatctttaccactaatgaaagactccctaaag |
172 |
Q |
| |
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|||| |||||||| ||||||| |||||||||| || || ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
13419435 |
agtgccactacagctatgtcgcagttctctactgtggagggcatacctaacttcttccagagacaatgaatctttaccactaatgaaagactccctaaat |
13419534 |
T |
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| Q |
173 |
ttctcatatgacaatggtaatgaaactaacagaatcaagg |
212 |
Q |
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|||||||||||||||||||| || ||||||| |||||||| |
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| T |
13419535 |
ttctcatatgacaatggtaaagagactaacaaaatcaagg |
13419574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 30047032 - 30046903
Alignment:
| Q |
81 |
tacagttatgtcgtcgttctctactttgaagagcatacctaacttcttccagaaacaaagaatctttaccactaatgaaagactccctaaagttctcata |
180 |
Q |
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||||||||||||| |||||||||| |||| ||||||||||||||| ||| |||||| |||| |||| ||||||||||||||||||||||||||||||| |
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| T |
30047032 |
tacagttatgtcgcagttctctactacgaag-gcatacctaacttctgccacaaacaatgaatatttatcactaatgaaagactccctaaagttctcata |
30046934 |
T |
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| Q |
181 |
tgacaatggtaatgaaactaacagaatcaag |
211 |
Q |
| |
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|||||||||||| |||||||| ||||||||| |
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| T |
30046933 |
tgacaatggtaaagaaactaatagaatcaag |
30046903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 30046874 - 30046837
Alignment:
| Q |
252 |
gatctaataatattgaattcaattgatctagatgttct |
289 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||||| |
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| T |
30046874 |
gatctaataatattgaattctatttatctagatgttct |
30046837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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