View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12544_low_4 (Length: 302)
Name: NF12544_low_4
Description: NF12544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12544_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 3361813 - 3361989
Alignment:
| Q |
16 |
aaactaacaccagcaaagtacatgcaaaaagatataaactcatttatcatataagtataacaccaaaactgatatagataattaataaccaaagatgagg |
115 |
Q |
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| T |
3361813 |
aaactaacaccagcaaagtacatgcaaaaagatataaactcatttatcatataagtataacaccaaaactgatatagataattaataaccaaagatgagg |
3361912 |
T |
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| Q |
116 |
taaaataagaaaccttgatcaaaagatgaactccatagattaaaagccatgtatgaaatgcaagtaactatttcctg |
192 |
Q |
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| T |
3361913 |
taaaataagaaaccttgatcaaaagatgaactccatagattaaaagccatgtatgaaatgcaagtaactatttcctg |
3361989 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 3362023 - 3362088
Alignment:
| Q |
226 |
tcacgaatttatctaatactattattaatccaaagaagcatcaacaatagaaatgcaacagtgaac |
291 |
Q |
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| T |
3362023 |
tcacgaatttatctaatactattattaatccaaagaagcatcaacaatagaaatgcaacagagaac |
3362088 |
T |
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