View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12544_low_5 (Length: 231)

Name: NF12544_low_5
Description: NF12544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12544_low_5
NF12544_low_5
[»] chr5 (3 HSPs)
chr5 (131-215)||(37237609-37237693)
chr5 (18-98)||(37237726-37237806)
chr5 (134-215)||(33595947-33596027)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 37237693 - 37237609
Alignment:
Q  131 tataaccaaattatatgaagcaatatttacttcttctataaatcattcaaaaatgaaaattgagataatcaatgttacttaccta 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37237693 tataaccaaattatatgaagcaatatttacttcttctataaatcattcaaaaatgaaaattgagataatcaatgttacttaccta 37237609  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 37237806 - 37237726
Alignment:
Q  18 tttgtccattctcatatttttgtgaacaagctaacaaataatcatcttaatagcaaaagacaaacctgttctgcaagaatg 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37237806 tttgtccattctcatatttttgtgaacaagctaacaaataatcatcttaatagcaaaagacaaacctgttctgcaagaatg 37237726  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 33595947 - 33596027
Alignment:
Q  134 aaccaaattatatgaagcaatatttacttcttctataaatcattcaaaaatgaaaattgagataatcaatgttacttaccta 215  Q
    |||||||||||||||||||||||||||||||| |||||  || || ||| |  ||||||||| |||||||||||||||||||    
T  33595947 aaccaaattatatgaagcaatatttacttcttatataatgcactc-aaagtccaaattgagacaatcaatgttacttaccta 33596027  T

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