View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12544_low_6 (Length: 207)
Name: NF12544_low_6
Description: NF12544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12544_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 33630226 - 33630403
Alignment:
| Q |
14 |
agatgaaggtgaggtgctgtgacggcgttgtgttcgagcttgaagatgctctggtgtattcatcttcgacagtcaaaaaattgatagtggaaaatatatc |
113 |
Q |
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| T |
33630226 |
agatgaaggtgaggtgctgtgacggcgttgtgttcgagcttgaagatgctctggtgtattcatcttcgacagtcaaaaaattgatagtggaaaatatatc |
33630325 |
T |
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| Q |
114 |
tagcagaggatgctttggtggatgcctcttcggcagcggccagggcgagaatattgagatcagttttgttgaagagat |
191 |
Q |
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| T |
33630326 |
tagcagaggatgctttggtggatgcctcttcggcagcggccagggcgagaatattgagatcagttttgttgaagagat |
33630403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 50946947 - 50947124
Alignment:
| Q |
14 |
agatgaaggtgaggtgctgtgacggcgttgtgttcgagcttgaagatgctctggtgtattcatcttcgacagtcaaaaaattgatagtggaaaatatatc |
113 |
Q |
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| T |
50946947 |
agatgaaggtgaagtgttgcgacggcgttgtgtttgagcttgaagatgctttggtgtatgcatcttcgactgtcaaaaaattgatagtggaaaatatatc |
50947046 |
T |
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| Q |
114 |
tagcagaggatgctttggtggatgcctcttcggcagcggccagggcgagaatattgagatcagttttgttgaagagat |
191 |
Q |
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| T |
50947047 |
tagcagaggatgctttggtggatgcctcttcggcagcgcgcagggtgatagttgtgagatcagttttgctgaagagat |
50947124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 15854808 - 15854983
Alignment:
| Q |
16 |
atgaaggtgaggtgctgtgacggcgttgtgttcgagcttgaagatgctctggtgtattcatcttcgacagtcaaaaaattgatagtggaaaatatatcta |
115 |
Q |
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| T |
15854808 |
atgaaggtgaagtgttgtgacggcgttgtgttggagcttgaagatgctttggtgtatgcatcttcgactgtccaaaaattgatagaaaaaaatatatcca |
15854907 |
T |
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| Q |
116 |
gcagaggatgctttggtggatgcctcttcggcagcggccagggcgagaatattgagatcagttttgttgaagagat |
191 |
Q |
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| T |
15854908 |
gcagaggatgcattagtgtatgccacttcggcggcggccagggcaataattttgagatcagttttgaagaagagat |
15854983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 50956461 - 50956636
Alignment:
| Q |
16 |
atgaaggtgaggtgctgtgacggcgttgtgttcgagcttgaagatgctctggtgtattcatcttcgacagtcaaaaaattgatagtggaaaatatatcta |
115 |
Q |
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| T |
50956461 |
atgaaggtaaagtgttgtgacggtgttgtgttgaagcttgaagatgctttggtgtatgcatcttctactgtcaaaaaattgataggagaaaatatatcta |
50956560 |
T |
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| Q |
116 |
gcagaggatgctttggtggatgcctcttcggcagcggccagggcgagaatattgagatcagttttgttgaagagat |
191 |
Q |
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| T |
50956561 |
gcagaggatgcttaagtgtatgcctcctcggcgccagccagggcgagaactgtgagatcagttttgtagtagagat |
50956636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 50963396 - 50963513
Alignment:
| Q |
16 |
atgaaggtgaggtgctgtgacggcgttgtgttcgagcttgaagatgctctggtgtattcatcttcgacagtcaaaaaattgatagtggaaaatatatcta |
115 |
Q |
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| T |
50963396 |
atgaaggtgaagtgttgcgacggtattgtgttggagcttgaagatgctttggtgtatgcatctttgactgtcaaacaattgatagatgaaaagataccta |
50963495 |
T |
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| Q |
116 |
gcagaggatgctttggtg |
133 |
Q |
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| T |
50963496 |
gcagaagatgctttggtg |
50963513 |
T |
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