View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_high_1 (Length: 818)
Name: NF12545_high_1
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 637; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 16 - 813
Target Start/End: Original strand, 2563804 - 2564603
Alignment:
| Q |
16 |
actgctcgtactctggttaccaagtaagaaattacagcttgtggaaaagagaatatttacaaactaattataacttcttagtatcattcatttatatatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
2563804 |
actgctcgtactctggttaccaagtaagaaattacagcttgtggaaaagagaatatttacaaactagttataacttcttagtatcattcatttatggttg |
2563903 |
T |
|
| Q |
116 |
g----------ttgtgtaccaaaaggatgaactattatgggctgctgcttggttatacaaggccagtggagaaagcaaatacttgaagtacatcacagat |
205 |
Q |
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| T |
2563904 |
tgatttttgaattgtgtatgaaaaggatgaactattatgggctgctgcttggttatacaaggccagtggagaaagcaagtacttgaagtacatcacagat |
2564003 |
T |
|
| Q |
206 |
aaccaaggttggaatcaggcagcgtctgagttcagctgggataacaaatttgttggagttcaaacattactaacacaggtctttatatttacagatacat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2564004 |
aaccaaggttggaatcaggcagcgtctgagttcagctgggataacaaatttgttggagttcaaacattactaacacaggtctttatatttacacatacat |
2564103 |
T |
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| Q |
306 |
ataacaaactaatgatcttttactaaacat---tagttccaaagaaagaattaactcaataattttactaggaattctatggtgggaagaaggacttagc |
402 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564104 |
ataacaaactaatgatcttttactaaacattagtagttccaaagaaagaattaactcaataattttactaggaattctatggtgggaagaaggacttagc |
2564203 |
T |
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| Q |
403 |
aaagattcatagtgatggtgaatcatttatatgtgctttgatgccagtaagttactctctacagattnnnnnnnctcctggtatatatttacttataggt |
502 |
Q |
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| T |
2564204 |
aaagattcatagtgatggtgaatcatttatatgtgctttgatgcaaggaagttactctctacagattaaaaaaacacctggtatatatttacttataggt |
2564303 |
T |
|
| Q |
503 |
caatcttatttcaatcaacattaattcattattgatggaatgagctgaattagcatttgatttattattaactcaggtggacttttgtatactagagata |
602 |
Q |
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| T |
2564304 |
caatcttatttcaatcaacattaattcattattgatggaatgagctgaa------------ttattattaactcaggtggacttttgtatactagagata |
2564391 |
T |
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| Q |
603 |
gtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatcctaaacaaaaatcatattgatggaattcattgtggctctac |
702 |
Q |
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| T |
2564392 |
gtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatcctaaacaaaaataatattgatggaattcattgtggctctac |
2564491 |
T |
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| Q |
703 |
caatttcacctcctctgaaattaaagcctttgcaaaatcacaggtattttgtacactaatttatgactc-taagacattaagcccatttctttattattt |
801 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
2564492 |
caatttcacctcctctgaaattaaagcctttgcaaaatcacaggtattttgtacactaatttatgactcttaagacatttagcccatttctttattattt |
2564591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 117 - 296
Target Start/End: Original strand, 2573765 - 2573944
Alignment:
| Q |
117 |
ttgtgtaccaaaaggatgaactattatgggctgctgcttggttatacaaggccagtggagaaagcaaatacttgaagtacatcacagataaccaaggttg |
216 |
Q |
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||||||| ||||||||||| |||||||||||||| ||||| |||||||||| ||||| |||||||||||||||| |||||||||| |||||||||||| |
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| T |
2573765 |
ttgtgtatgaaaaggatgaattattatgggctgctacttggctatacaaggctagtggggaaagcaaatacttgacgtacatcacaagtaaccaaggttg |
2573864 |
T |
|
| Q |
217 |
gaatcaggcagcgtctgagttcagctgggataacaaatttgttggagttcaaacattactaacacaggtctttatattta |
296 |
Q |
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| T |
2573865 |
gagtcaagcagtgtctgaatttagctgggataacaaatttgttggagctcaaacattactaacacaggtattcatattta |
2573944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 562 - 749
Target Start/End: Original strand, 2574246 - 2574433
Alignment:
| Q |
562 |
atttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatc |
661 |
Q |
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||||||| ||||||||||||| ||| |||||| ||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2574246 |
atttattgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaaatc |
2574345 |
T |
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| Q |
662 |
ctaaacaaaaatcatattgatggaattcattgtggctctaccaatttcacctcctctgaaattaaagcctttgcaaaatcacaggtat |
749 |
Q |
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| T |
2574346 |
ttaaacaaaaaccatattgatggaatacactgtggctctgcccatttttcaccctctgagattagagcctttgcaaaattacaggtat |
2574433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 465
Target Start/End: Original strand, 2574055 - 2574148
Alignment:
| Q |
372 |
aggaattctatggtgggaagaaggacttagcaaagattcatagtgatggtgaatcatttatatgtgctttgatgccagtaagttactctctaca |
465 |
Q |
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||||||| ||||| |||| | | || ||||| ||| |||| | ||||| |||||||||||||||||| |||||||||| |||| ||||||||| |
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| T |
2574055 |
aggaattttatggcgggagggaagagttagccaagtttcagactgatgctgaatcatttatatgtgcattgatgccaggaagtagctctctaca |
2574148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 2573653 - 2573687
Alignment:
| Q |
16 |
actgctcgtactctggttaccaagtaagaaattac |
50 |
Q |
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| T |
2573653 |
actgctcatactctggttaccaagtaagaaattac |
2573687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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