View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_high_13 (Length: 384)
Name: NF12545_high_13
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_high_13 |
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| [»] scaffold0267 (1 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 20475442 - 20475808
Alignment:
| Q |
1 |
caccaatatcttgtaattcttatcgatacagaaagtttggagcaaatgaaataaatagcaaatggagaaacaaaaattaactcaggttattttatctgca |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20475442 |
caccaatatcttgtaattcttatcgatacaaaaagtttggagcaaatgaaataaatagcaaatggagaaacaaaaattaactcagtttattttatctgca |
20475541 |
T |
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| Q |
101 |
ataagttcaaaactaattgacataaaattaaaacatcataatccaatctaaagattttgatccaacaactagcaaaaaactgccaacggaatcatccaac |
200 |
Q |
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| T |
20475542 |
ataagttcaaaactaattgacataaaattaaaacatcataatccaatctaaagattttgatccaacaactagcaaaaaactgccaacggaatcatccaac |
20475641 |
T |
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| Q |
201 |
aaaattgtaaaactagccaaggaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaaaaataaatagttg |
300 |
Q |
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| T |
20475642 |
aaaattgtaaaactagccaaggaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaaaaataaatagttg |
20475741 |
T |
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| Q |
301 |
ttgcattgcagcttaatttggacaaggacgaggcaaaaccaagctctgcatatgctcatgagcatca |
367 |
Q |
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| T |
20475742 |
ttgcattgcagcttaatttggacaaggacgaggcaaaaccaagctctgcatatgctcatgagcatca |
20475808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 190 - 365
Target Start/End: Complemental strand, 13805 - 13630
Alignment:
| Q |
190 |
aatcatccaacaaaattgtaaaactagccaaggaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaaaa |
289 |
Q |
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|||||||||||||||| || |||||| | |||||||||| |||||| |||||||||| | | ||||||| | || || |||| |||||||||||||| |
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| T |
13805 |
aatcatccaacaaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcacaacctaacataaattcagaaaa |
13706 |
T |
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| Q |
290 |
ataaatagttgttgcattgcagcttaatttggacaaggacgaggcaaaaccaagctctgcatatgctcatgagcat |
365 |
Q |
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| T |
13705 |
acaaacatttgttgcatacgagattaatgtggacgaggacaaggcaaaaccaagctctgcatatgttcatcagcat |
13630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 354
Target Start/End: Complemental strand, 3838324 - 3838160
Alignment:
| Q |
190 |
aatcatccaacaaaattgtaaaactagccaaggaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaaaa |
289 |
Q |
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||||||||| |||||| || |||||| | |||||||||| |||||| |||||||||| | | ||||||| | || || |||| |||||||||||||| |
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| T |
3838324 |
aatcatccagcaaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcaaaacctaacataaattcagaaaa |
3838225 |
T |
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| Q |
290 |
ataaatagttgttgcattgcagcttaatttggacaaggacgaggcaaaaccaagctctgcatatg |
354 |
Q |
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| T |
3838224 |
acaaacagttgttgcatacgagattaatgtggatgaggacaaggcaaaaccaagctctgcatatg |
3838160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 13783877 - 13783937
Alignment:
| Q |
112 |
actaattgacataaaattaaaacatcataatccaatctaaagattttgatccaacaactag |
172 |
Q |
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||||||| | |||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |
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| T |
13783877 |
actaattaatataaaattaaaatatcatcatccaatccaaagactttgatccaacaactag |
13783937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 13784008 - 13784061
Alignment:
| Q |
191 |
atcatccaacaaaattgtaaaactagccaaggaaaacacaattaagtaaccatc |
244 |
Q |
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| T |
13784008 |
atcatacaacaaaatagtcaaactagctaaggaaaacacatttaaggaaccatc |
13784061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 40793749 - 40793798
Alignment:
| Q |
122 |
ataaaattaaaacatcataatccaatctaaagattttgatccaacaacta |
171 |
Q |
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| T |
40793749 |
ataaaattaaaacatcatcatccaattcaaagactttgatccaacaacta |
40793798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 33596 - 33646
Alignment:
| Q |
122 |
ataaaattaaaacatcataatccaatctaaagattttgatccaacaactag |
172 |
Q |
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||||||| |||||||||| |||||||| ||||| || |||||||||||||| |
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| T |
33596 |
ataaaatcaaaacatcatcatccaatccaaagacttcgatccaacaactag |
33646 |
T |
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