View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_high_14 (Length: 382)
Name: NF12545_high_14
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 372
Target Start/End: Complemental strand, 1586814 - 1586462
Alignment:
| Q |
20 |
aatcttgttttggataaggatatttatttgaaaaagttttggattggcaattagaaatgaatgtacgatgttaaggattacaaaactggaagagaggaga |
119 |
Q |
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| T |
1586814 |
aatcttgttttggataaggatatttatttgaaaaagttttggattggcaattagaaatgaatgtacgatgttaaggattacaaaactggaagagaggaga |
1586715 |
T |
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| Q |
120 |
tggagttcacgtgaggttgattgtgaaaggtagtggtcactgaccacactagtttagccttggttgccatgtgcttcttgtagaatctaaactttgtgaa |
219 |
Q |
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| T |
1586714 |
tggagttcacgtgaggttgattgtgaaaggtagtggtcactgaccacactagtttagccttggttgccatgtgcttcttgtagaatctaaactttgtgaa |
1586615 |
T |
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| Q |
220 |
aacgaaaacctcagccattaggctcacagaattggattttctttttggctttggccccatcaataatttcgtgaaagattgttcctttgatttgaaagaa |
319 |
Q |
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| T |
1586614 |
aacgaaaacctcagccattagcctcacagaattggattttctttttggctttggccccatcaataatttcgtgaaagattgttcctttgatttgaaagaa |
1586515 |
T |
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| Q |
320 |
ataaaataaaacaataactaagttttttattttatcctgttgttctgtctgtg |
372 |
Q |
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| T |
1586514 |
ataaaataaaacaataactaagttttttattttatcctgttgttctgtctgtg |
1586462 |
T |
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