View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_high_15 (Length: 381)
Name: NF12545_high_15
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 52472165 - 52472531
Alignment:
| Q |
1 |
ctcacccgtcgattgttgcctatgttttgatatgtctctattttcctttatgctgagagcttctcaacatatttttccaattcaccacgacctttccgat |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52472165 |
ctcatccgtcgattgttgcctatgttttgatatgtctctattttcctttatgcttagagcttctcaacatatttttccaattcaccacgacctttccgat |
52472264 |
T |
|
| Q |
101 |
ggtctgcaagcaacccactctaaaaataatgtcaattccacttaagtattat---acaaaggcttcaatgtttacctctacctcaccaaacagaatcacc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52472265 |
ggtctgcaagcaacccactctaaaaataatgtcaattccacttaagtattattacacaaaggcttcaatgtttacctctacctcaccaaacagaatcacc |
52472364 |
T |
|
| Q |
198 |
g--ttttttagcgttttccattggttgtgactctatgatcatctccttctttcttctaatagatcaatgtctagtagtagtagatatatcttcttcatct |
295 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52472365 |
gttttttttagcgttttccattggttgtgactctatgatcatctccttctttcttctaatagatcaatgtc------tagtagatatatcttcttcatct |
52472458 |
T |
|
| Q |
296 |
ttccaactttcccacatatactttccttatattgggcttcctagggcccaaatccaacactttttcctctgtg |
368 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52472459 |
ttccaactttcccacatatactttccttatattgggcttcctagggcccaaatccaacactttttcctttgtg |
52472531 |
T |
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