View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_high_16 (Length: 380)
Name: NF12545_high_16
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 34129961 - 34129623
Alignment:
| Q |
17 |
acgtatgcataatttaacgattagcgataccagccgtccaaaatcatactctggagctttcatcgtaatactttttgttggggtgctgaatcagaaacca |
116 |
Q |
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| T |
34129961 |
acgtatgcataatttaacgatttgcgataccagccgtccaaaatcatactctggagctttcatccaaagactttttg-----gtgctgaatcagaaacca |
34129867 |
T |
|
| Q |
117 |
ctgaactaagtacattgtttgcaaccatttggtttcatttatctatcttccaaatttcaatgaaaattttctgtaacaagcaaacatatccattcctatt |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34129866 |
atgaactaagtacattgtttgcaaccatttggattcatttatctatcttccaaatttcaatgaaaattttctggaacaagcaaacatatccattcctatt |
34129767 |
T |
|
| Q |
217 |
ttccgaaaagnnnnnnnnnnctaaggattcttcaatgataaggaagtgattgaacaaagcactaactcactaaagtatttaactaactcaaccatattag |
316 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34129766 |
ttccgaaaa----aaaaaaactaaggattcttcaatgataaggaagtgattgaacaaagcactaattcactaaagtatttaactaactcaaccatattag |
34129671 |
T |
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| Q |
317 |
tgtnnnnnnnnnctaactgaacgttcaaattcaaaataatgaacatac |
364 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |
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| T |
34129670 |
tgttaaaaaaaactaactgaacgttcaaattcaaaataatgaacatac |
34129623 |
T |
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