View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12545_high_2 (Length: 787)

Name: NF12545_high_2
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12545_high_2
NF12545_high_2
[»] scaffold0066 (4 HSPs)
scaffold0066 (407-590)||(32617-32800)
scaffold0066 (653-785)||(32422-32554)
scaffold0066 (92-223)||(32979-33108)
scaffold0066 (273-333)||(32874-32934)
[»] chr5 (1 HSPs)
chr5 (42-91)||(23290000-23290049)
[»] chr4 (1 HSPs)
chr4 (28-92)||(482184-482248)
[»] chr2 (1 HSPs)
chr2 (40-91)||(18054718-18054769)
[»] chr3 (2 HSPs)
chr3 (40-89)||(11666021-11666070)
chr3 (59-92)||(25948847-25948880)


Alignment Details
Target: scaffold0066 (Bit Score: 176; Significance: 2e-94; HSPs: 4)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 407 - 590
Target Start/End: Complemental strand, 32800 - 32617
Alignment:
Q  407 atttttatcatttcactcatgtcacttctggacagagcttattggcggttagtactacaaagtatgtttgcagtgtttattaaataattccggcattgcc 506  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32800 atttttatcatttcactcatttcacttctggacagagcttattggcggttagtactacaaagtatgtttgcagtgtttattaaataattcaggcattgcc 32701  T
Q  507 tctagttatttctgtccaagaacaaactacattcaaacaataaaatttgaaagtaccatcaattcgtggtagtgcaatggctcc 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32700 tctagttatttctgtccaagaacaaactacattcaaacaataaaatttgaaagtaccatcaattcgtggtagtgcaatggctcc 32617  T

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Target: scaffold0066; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 653 - 785
Target Start/End: Complemental strand, 32554 - 32422
Alignment:
Q  653 gttcgattactatatatgaaacttcatttcctctttattattagccaatttttcattcatgtttatacaaaaaacgcttaaacttgaaacccaagtttac 752  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32554 gttcgattactatatatgaaacttcatttcctctttattattagccaatttttcattcatgttaatacaaaaaacgcttaaacttgaaacccaagtttac 32455  T
Q  753 ttgtatcttatggatgtccatctcattggattg 785  Q
    ||||||||||||| |||| |||| |||| ||||    
T  32454 ttgtatcttatggctgtctatctaattgcattg 32422  T

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Target: scaffold0066; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 92 - 223
Target Start/End: Complemental strand, 33108 - 32979
Alignment:
Q  92 tatcaccatctcctatcagaagatgcagaagcaggactaagattttcttcttttgggatgaaagatgaaaaaccgattgaaaatctgatcttatacgcgc 191  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33108 tatcaccatctcctatcagaaaatgcagaagcaggactaaggtttt--tcttttgggatgaaagatgaaaaactgattgaaaatctgatcttatacgcgc 33011  T
Q  192 ccgcctccttcgttttgtcttcaaccagcgta 223  Q
    |  |||||||||||||||||||||||||||||    
T  33010 cttcctccttcgttttgtcttcaaccagcgta 32979  T

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Target: scaffold0066; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 32934 - 32874
Alignment:
Q  273 gttagtcacggttaaaataaaagtgtggcaattatagcttaccttatctttctatccaaac 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32934 gttagtcacggttaaaataaaagtgtggcaattatagcttaccttatctttctatccaaac 32874  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 23290049 - 23290000
Alignment:
Q  42 acgtgtctgataccgcaacacgtctaatccaaggaatgtccgtgcttcat 91  Q
    |||||||||| ||||  |||||||||||||||| ||||||||||||||||    
T  23290049 acgtgtctgacaccgggacacgtctaatccaagcaatgtccgtgcttcat 23290000  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 482248 - 482184
Alignment:
Q  28 tgtcggtgtcgaacacgtgtctgataccgcaacacgtctaatccaaggaatgtccgtgcttcatt 92  Q
    ||||||||||| |||||||||||| |||  |||||||||||||| | || ||||| |||||||||    
T  482248 tgtcggtgtcggacacgtgtctgacacctgaacacgtctaatccgatgagtgtccatgcttcatt 482184  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 18054769 - 18054718
Alignment:
Q  40 acacgtgtctgataccgcaacacgtctaatccaaggaatgtccgtgcttcat 91  Q
    |||||||||||| || | |||||| || ||||||||||||||||||||||||    
T  18054769 acacgtgtctgacacggaaacacgccttatccaaggaatgtccgtgcttcat 18054718  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 11666021 - 11666070
Alignment:
Q  40 acacgtgtctgataccgcaacacgtctaatccaaggaatgtccgtgcttc 89  Q
    |||||||||||||| || |||||| ||||| |||||| ||||||||||||    
T  11666021 acacgtgtctgatatcggaacacgcctaattcaaggagtgtccgtgcttc 11666070  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 25948880 - 25948847
Alignment:
Q  59 acacgtctaatccaaggaatgtccgtgcttcatt 92  Q
    |||||| |||||||||||||||||||||||||||    
T  25948880 acacgtgtaatccaaggaatgtccgtgcttcatt 25948847  T

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