View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_high_3 (Length: 670)
Name: NF12545_high_3
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 409 - 654
Target Start/End: Original strand, 44610008 - 44610251
Alignment:
| Q |
409 |
ctttctataatggatgttttgtaaggatatatacacatacaaataacatattataatttttctgcagctgtggaggtattggagaacctagcatatcttg |
508 |
Q |
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| T |
44610008 |
ctttctataatggatgttttgtaaggatatacacacacaca--taacatattataatttttctgcagctgtggaggtattggagaacctagcatatcttg |
44610105 |
T |
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| Q |
509 |
caaatgcaagcaaccttgttttatacctttccaagtttatgcacttttcaccttctacctctgccaacattgtcaccaacttcatgggaacagctttcct |
608 |
Q |
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| T |
44610106 |
caaatgcaagcaaccttgttttatacctttccaagtttatgcacttttcaccttctacctctgccaacattgtcaccaacttcatgggaacagctttcct |
44610205 |
T |
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| Q |
609 |
acttgctattcttggtggatttcttgcagatgcttttttcactact |
654 |
Q |
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| T |
44610206 |
acttgctattcttggtggatttcttgcagatgcttttttcactact |
44610251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 37816106 - 37816500
Alignment:
| Q |
18 |
taaatgaatcggtgtggcataaagaagagactatacgaggaagttaaatgcattnnnnnnntgaaattttataggcatgattagaatcccaagtaacatg |
117 |
Q |
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| T |
37816106 |
taaatgaatcggtgtggcataaagaagagactatacgaggaagttaaatgcattaaaaaaatgaaattttgtaggcatcattagaatcccaagtaacatg |
37816205 |
T |
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| Q |
118 |
attcaaatcaatattataaccaagttaatttgaattatccttcaaagtaatttgaatttccctttggcaagatacaca-------------tcaaagttc |
204 |
Q |
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| T |
37816206 |
attcaaatcaacattataacaaagttaatttgaattacccttcaaagtaatttgaatttccctttagcaagatacacaaaaaggagtaaattcaaagttc |
37816305 |
T |
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| Q |
205 |
cgttttatctgagagattgacaccct--tatcttaattcgaatcatcac--------nnnnnnngattactctatagtgcgtatgatttgaatcatgcac |
294 |
Q |
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| T |
37816306 |
cattttatcttagaaattgacacccttatatcttgattcgaatcatcacaaaaaaaaaaaaaaatattactctatagtgcgcatgattttaatcatgcac |
37816405 |
T |
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| Q |
295 |
ctgcgaaaaactttaaattgcactcaacctaagcatgactcaaatcatgatatccaaaatgacttagaaatttattttaatgcattttcattagt |
389 |
Q |
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| T |
37816406 |
ctacgaaaaactttaaattgcactcaacctaagcatgactcaaatcatgatatccaaaatgacttagaaacttattttaatgcattttcattagt |
37816500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 626
Target Start/End: Complemental strand, 25177419 - 25177258
Alignment:
| Q |
465 |
tttttctgcagctgtggaggtattggagaacctagcatatcttgcaaatgcaagcaaccttgttttatacctttccaagtttatgcacttttcaccttct |
564 |
Q |
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| T |
25177419 |
tttttatgcagtggtggaggtgctagagaatcttgcatttctagcaaatgcaagcaacttggtgttatatctaaggaaatatatgcacttttcaccatca |
25177320 |
T |
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| Q |
565 |
acctctgccaacattgtcaccaacttcatgggaacagctttcctacttgctattcttggtgg |
626 |
Q |
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| T |
25177319 |
aaatctgctaacaatgtgacaaatttcatgggaacagcttttcttcttgctttgcttggtgg |
25177258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 25811654 - 25811702
Alignment:
| Q |
114 |
catgattcaaatcaatattataaccaagttaatttgaattatccttcaa |
162 |
Q |
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| T |
25811654 |
catgactcaaatcaatattttcaccaagttgatttgaattacccttcaa |
25811702 |
T |
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